Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HBA48_RS06980 Genome accession   NZ_CP050135
Coordinates   1350482..1351012 (-) Length   176 a.a.
NCBI ID   WP_003785826.1    Uniprot ID   A0AAX2J3W4
Organism   Kingella kingae strain ATCC 23331     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345482..1356012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS06960 (HBA48_06995) - 1346260..1346676 (-) 417 WP_038311036.1 ProQ/FINO family protein -
  HBA48_RS06965 (HBA48_07000) aroB 1346695..1347777 (-) 1083 WP_003789801.1 3-dehydroquinate synthase -
  HBA48_RS06970 (HBA48_07005) - 1347777..1348289 (-) 513 WP_003789800.1 shikimate kinase -
  HBA48_RS06975 (HBA48_07010) pilQ 1348346..1350448 (-) 2103 WP_003789799.1 type IV pilus secretin PilQ Machinery gene
  HBA48_RS06980 (HBA48_07015) pilP 1350482..1351012 (-) 531 WP_003785826.1 pilus assembly protein PilP Machinery gene
  HBA48_RS06985 (HBA48_07020) pilO 1351046..1351669 (-) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  HBA48_RS06990 (HBA48_07025) - 1351672..1352331 (-) 660 WP_026036228.1 PilN domain-containing protein -
  HBA48_RS06995 (HBA48_07030) pilM 1352333..1353334 (-) 1002 WP_243763631.1 type IV pilus assembly protein PilM -
  HBA48_RS07000 (HBA48_07035) - 1353577..1355946 (+) 2370 WP_166503266.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19408.16 Da        Isoelectric Point: 5.2810

>NTDB_id=430268 HBA48_RS06980 WP_003785826.1 1350482..1351012(-) (pilP) [Kingella kingae strain ATCC 23331]
MKVKLFLMSALVLAGCSEQYGDLQEWMSQARAEAKTKVRPVEPLAPIEPVTYFAPQITGPNAFNMQRMKAAFQNGNAPDL
NRSKELLENYSLENLRYVGSIGTPGSLSALIEIQVNGEPHVYTVKQGNYLGQNFGRISKITADKIDLVETVEDTYGNWVN
RPAELLPMTDAAATAK

Nucleotide


Download         Length: 531 bp        

>NTDB_id=430268 HBA48_RS06980 WP_003785826.1 1350482..1351012(-) (pilP) [Kingella kingae strain ATCC 23331]
ATGAAAGTTAAATTATTTTTGATGTCGGCACTAGTGCTGGCAGGCTGTTCTGAACAGTATGGGGATTTGCAAGAGTGGAT
GAGTCAAGCAAGAGCAGAGGCAAAAACAAAAGTTCGCCCTGTTGAGCCTTTGGCACCGATTGAACCCGTTACTTATTTTG
CACCTCAAATTACAGGGCCGAATGCGTTTAATATGCAACGTATGAAAGCAGCTTTCCAAAATGGTAATGCGCCAGATTTG
AACCGAAGTAAAGAATTGCTAGAAAATTATAGTCTAGAGAATTTACGGTATGTTGGTTCAATTGGTACACCTGGTTCATT
ATCGGCTTTGATTGAAATCCAAGTAAATGGAGAGCCACACGTTTACACAGTGAAGCAAGGCAATTATTTGGGACAAAATT
TTGGTCGTATCTCTAAAATTACAGCGGATAAAATTGATTTGGTTGAAACTGTAGAAGATACGTATGGAAATTGGGTCAAT
CGACCAGCAGAGTTGCTGCCTATGACAGATGCAGCTGCTACTGCTAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

51.497

94.886

0.489