Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HBA48_RS00265 Genome accession   NZ_CP050135
Coordinates   57918..59381 (+) Length   487 a.a.
NCBI ID   WP_164538333.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52918..64381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS00250 (HBA48_00260) - 54734..56161 (+) 1428 WP_003788049.1 HlyD family type I secretion periplasmic adaptor subunit -
  HBA48_RS00255 (HBA48_00265) - 56451..56939 (+) 489 WP_003792114.1 toxin-activating lysine-acyltransferase -
  HBA48_RS00260 (HBA48_00270) - 56869..57633 (-) 765 WP_206520650.1 DDE-type integrase/transposase/recombinase -
  HBA48_RS00265 (HBA48_00275) pilA 57918..59381 (+) 1464 WP_164538333.1 signal recognition particle-docking protein FtsY Machinery gene
  HBA48_RS00270 (HBA48_00280) lpxB 59441..60592 (-) 1152 WP_003792117.1 lipid-A-disaccharide synthase -
  HBA48_RS00275 (HBA48_00285) - 60613..60777 (+) 165 WP_155114354.1 hypothetical protein -
  HBA48_RS00280 (HBA48_00290) - 60774..61106 (-) 333 WP_228368985.1 LysE family transporter -
  HBA48_RS00285 (HBA48_00295) ubiM 61351..62535 (-) 1185 WP_174259096.1 5-demethoxyubiquinol-8 5-hydroxylase UbiM -
  HBA48_RS00290 (HBA48_00300) - 62591..62917 (+) 327 WP_223877612.1 hypothetical protein -

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 52504.00 Da        Isoelectric Point: 4.1946

>NTDB_id=430250 HBA48_RS00265 WP_164538333.1 57918..59381(+) (pilA) [Kingella kingae strain ATCC 23331]
MFNLFNKLFNRKAETPPNTEKEPEQVQAASAPETAPAVANENVQAALSAETEVAQENTADEVPQAEAESTETAEENVQAA
LNAETEVAQENTVEAEPMRHSWATPVVEEVKETVQSAEQWAEDMAHAVAEKADELEMRAEILAEETSESVQTLEHALEGE
NALPEPELLPEEPVAPEAEESLGWTARLARGLSKSRNQMAKSLAGVFGGGKIDEDLYEELETVLITSDMGIEATEQLMNE
VRNRVSLKGLKDGAELRSALKDAIYDLLKPLEQPLVLPDNGQPFVIMMAGINGAGKTTSIGKLAKYFQSQGKSVMLAAGD
TFRAAAREQLQEWGARNNVTVISQEKGDSAAVCFDAVEAAKARKIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDA
PHEIMVVLDANIGQNAVNQVVAFDDALGVTGLIVTKLDGTAKGGVLAALVSSRAIPVRYIGVGESIDDLRPFNAKAFVDA
LLDEWSA

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=430250 HBA48_RS00265 WP_164538333.1 57918..59381(+) (pilA) [Kingella kingae strain ATCC 23331]
ATGTTTAATTTATTCAATAAACTGTTCAACCGGAAAGCCGAAACGCCGCCCAACACCGAAAAAGAACCAGAACAGGTGCA
GGCTGCTTCTGCGCCCGAAACTGCGCCTGCGGTTGCCAATGAAAATGTGCAGGCTGCTTTGAGTGCAGAAACCGAAGTCG
CGCAAGAAAACACGGCAGATGAAGTACCACAAGCTGAAGCCGAAAGCACGGAAACCGCAGAAGAAAATGTGCAGGCTGCT
TTGAACGCAGAAACCGAAGTCGCACAAGAAAATACGGTTGAAGCAGAACCCATGCGCCATAGCTGGGCAACGCCTGTGGT
GGAAGAAGTCAAAGAAACGGTGCAATCTGCCGAGCAATGGGCGGAAGACATGGCGCACGCGGTGGCAGAAAAAGCCGATG
AATTGGAAATGCGTGCCGAAATCTTGGCAGAAGAAACCAGCGAAAGCGTGCAGACGTTGGAACACGCGCTGGAAGGCGAA
AATGCGCTGCCCGAACCCGAATTGTTGCCCGAAGAGCCAGTCGCGCCTGAAGCGGAAGAATCCTTGGGCTGGACGGCACG
TTTGGCGCGTGGTTTGAGCAAATCGCGCAATCAAATGGCAAAGTCGTTGGCTGGCGTGTTTGGCGGCGGCAAAATTGACG
AAGATTTGTACGAAGAACTGGAAACGGTGCTGATTACCAGCGATATGGGCATTGAAGCGACCGAACAGTTGATGAACGAA
GTCCGCAATCGTGTGTCGCTCAAAGGCTTGAAAGACGGCGCGGAATTGCGTTCGGCACTCAAAGACGCGATTTATGATTT
GCTCAAACCATTGGAGCAGCCGCTGGTGTTGCCCGATAATGGTCAGCCGTTTGTGATTATGATGGCTGGCATCAATGGCG
CAGGCAAAACCACGTCTATTGGCAAATTGGCGAAGTATTTTCAATCGCAAGGCAAAAGTGTGATGTTGGCGGCGGGCGAT
ACCTTCCGTGCGGCGGCGCGTGAGCAGTTGCAAGAATGGGGTGCGCGAAACAATGTTACCGTGATTTCGCAAGAAAAAGG
CGACAGCGCGGCGGTGTGTTTTGATGCGGTGGAAGCGGCAAAAGCGCGTAAAATTGACGTGGTGCTGGCGGACACGGCTG
GACGCTTGCCAACGCAATTACACTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAAAATCCATGCCCGATGCG
CCACACGAAATCATGGTGGTGCTGGACGCGAACATCGGTCAAAACGCGGTCAATCAAGTGGTGGCGTTTGACGATGCGTT
GGGCGTAACAGGTTTGATTGTTACCAAGCTGGACGGCACGGCAAAAGGCGGCGTGTTGGCGGCGTTGGTAAGCAGTCGTG
CGATTCCTGTGCGCTATATTGGCGTGGGCGAGAGCATTGACGATTTGCGCCCGTTCAATGCCAAAGCGTTTGTGGACGCG
CTGTTGGACGAGTGGTCGGCATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(199-263)

SRP54-type protein, GTPase domain (SRP54)

(283-482)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

72.679

77.413

0.563