Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HBA50_RS01230 Genome accession   NZ_CP050133
Coordinates   239552..240949 (+) Length   465 a.a.
NCBI ID   WP_166492643.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 234552..245949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS01210 (HBA50_01210) - 235288..236830 (+) 1543 Protein_233 IS1182 family transposase -
  HBA50_RS01215 (HBA50_01215) - 236900..237589 (+) 690 WP_045500422.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  HBA50_RS01220 (HBA50_01220) - 237846..238295 (+) 450 WP_045500423.1 8-oxo-dGTP diphosphatase -
  HBA50_RS01225 (HBA50_01225) - 238381..238824 (+) 444 WP_045500426.1 dUTP diphosphatase -
  HBA50_RS01230 (HBA50_01230) radA 239552..240949 (+) 1398 WP_166492643.1 DNA repair protein RadA Machinery gene
  HBA50_RS01235 (HBA50_01235) - 241024..241719 (+) 696 WP_005591607.1 TIGR00266 family protein -
  HBA50_RS01240 (HBA50_01240) - 241887..242381 (+) 495 WP_045500428.1 carbonic anhydrase -
  HBA50_RS01245 (HBA50_01245) - 242482..243348 (+) 867 WP_045500429.1 ABC transporter permease -
  HBA50_RS01250 (HBA50_01250) - 243345..244103 (+) 759 WP_045500431.1 ABC transporter ATP-binding protein -
  HBA50_RS01255 (HBA50_01255) - 244269..245260 (-) 992 Protein_242 M protein trans-acting positive regulator PRD domain-containing protein -
  HBA50_RS01260 (HBA50_01260) - 245552..245791 (+) 240 WP_015605856.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51043.65 Da        Isoelectric Point: 6.7562

>NTDB_id=430193 HBA50_RS01230 WP_166492643.1 239552..240949(+) (radA) [Streptococcus cristatus ATCC 51100]
MDYFFKRRKSIIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNR
TKTEMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAE
TNMQNIRTEIEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHM
VDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQA
LVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECF
IGEIGLTGEIRRVNRIEQRINEAAKLGFTKIYAPKNSLSGLKVPDNIQVIGVTTIGEVLKKVFAG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=430193 HBA50_RS01230 WP_166492643.1 239552..240949(+) (radA) [Streptococcus cristatus ATCC 51100]
ATAGATTATTTTTTTAAAAGGAGGAAATCTATCATCGCTAAGAAAAAGACGACCTTTGTCTGTCAAAATTGTGAATACCA
TTCGCCCAAATACCTAGGTCGCTGTCCCAACTGCGGCTCTTGGTCTTCTTTTGTTGAGGAAGTGGAGGCCGCAGAAGTCA
AGCATGCCCGTGTTTCCTTGACAGGTGAAAAGACTCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAATCGG
ACCAAGACGGAAATGGACGAATTCAATCGTGTGCTGGGTGGTGGCGTAGTGCCGGGCAGTCTGGTCCTGATTGGCGGAGA
TCCCGGTATCGGGAAGTCCACCCTGCTTCTGCAAGTATCCACCCAGCTTTCCCACCAGGGCACCGTCCTATATGTCAGTG
GGGAGGAATCAGCTGAGCAGATTAAGTTGCGGGCGGAGCGTCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAG
ACCAATATGCAAAACATCCGCACGGAGATTGAGAAAATCAAGCCAGATTTTCTGATTATTGACTCCATTCAGACAGTGAT
GTCGCCGGAGATTTCCAGTGTTCAAGGCTCTGTCTCTCAGGTTCGAGAGGTGACAGCTGAGCTCATGCAGCTGGCTAAGA
CCAATAATATTGCGACCTTTATCGTTGGTCACATGACCAAGGAAGGAACCTTAGCTGGTCCCCGAACGCTAGAGCACATG
GTGGACACCGTGCTTTATTTTGAAGGCGAACGTCAGCACACGTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTC
TACCAATGAGATTGGTATTTTTGAGATGCAGTCTGGCGGGCTAGTTGAGGTGCTCAATCCAAGCCAAGTCTTTCTAGAAG
AGCGACTGGATGGCGCAACAGGTTCTTCTATCGTTGTGACCATGGAAGGAACGCGGCCGATTTTGGCAGAGGTGCAAGCT
TTGGTGACACCGACCATGTTCGGCAATGCCAAGCGGACCACGACCGGCCTGGACTTTAACCGAGCCAGCCTCATTATGGC
GGTTCTGGAAAAGAGGGCAGGCCTTCTCTTGCAAAATCAAGATGCTTACCTCAAGTCAGCTGGAGGTGTCAAGCTAGATG
AGCCAGCGATTGATTTGGCGGTGGCGGTCGCCATTGCTTCCAGTTATAAGGATCTGCCGACCAATCCTCAAGAGTGCTTT
ATCGGTGAAATTGGCCTGACTGGTGAAATCCGCCGGGTCAACCGTATCGAGCAGCGCATCAACGAAGCAGCAAAACTAGG
CTTCACCAAGATTTATGCTCCTAAAAACTCTTTGAGTGGCCTCAAAGTTCCAGACAATATCCAAGTCATCGGTGTGACAA
CGATTGGGGAAGTCTTGAAAAAAGTCTTTGCTGGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(19-46)

AAA domain (AAA_25)

(72-229)

Subunit ChlI of Mg-chelatase (ChlI)

(372-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

92.494

97.419

0.901
  radA Streptococcus pneumoniae D39

92.274

97.419

0.899
  radA Streptococcus pneumoniae R6

92.274

97.419

0.899
  radA Streptococcus pneumoniae Rx1

92.274

97.419

0.899
  radA Streptococcus mitis SK321

92.274

97.419

0.899
  radA Streptococcus pneumoniae TIGR4

92.274

97.419

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.009

98.495

0.611