Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HBA58_RS08805 Genome accession   NZ_CP050130
Coordinates   1826449..1827054 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain GSJ/2017-Sal-008     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821449..1832054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA58_RS08785 - 1821844..1823604 (-) 1761 WP_000156454.1 Lon protease family protein -
  HBA58_RS08790 matP 1823790..1824242 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HBA58_RS08795 ompA 1824314..1825366 (-) 1053 WP_001674965.1 porin OmpA -
  HBA58_RS08800 sulA 1825723..1826232 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  HBA58_RS08805 sxy/tfoX 1826449..1827054 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  HBA58_RS08810 yccS 1827041..1829194 (-) 2154 WP_000950880.1 YccS family putative transporter -
  HBA58_RS08815 - 1829213..1829659 (-) 447 WP_001261222.1 YccF domain-containing protein -
  HBA58_RS08820 helD 1829783..1831837 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=430159 HBA58_RS08805 WP_001202375.1 1826449..1827054(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain GSJ/2017-Sal-008]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=430159 HBA58_RS08805 WP_001202375.1 1826449..1827054(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Typhimurium strain GSJ/2017-Sal-008]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751