Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HAV35_RS11160 Genome accession   NZ_CP050120
Coordinates   2219483..2219959 (+) Length   158 a.a.
NCBI ID   WP_034349477.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BND-54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2214483..2224959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS11140 (HAV35_11145) - 2214812..2215432 (-) 621 WP_010887197.1 thiamine diphosphokinase -
  HAV35_RS11145 (HAV35_11150) - 2215532..2216890 (+) 1359 WP_027479530.1 acyl-CoA dehydrogenase family protein -
  HAV35_RS11150 (HAV35_11155) - 2216954..2217706 (-) 753 WP_010887195.1 NUDIX hydrolase -
  HAV35_RS11155 (HAV35_11160) dnaB 2217703..2219049 (-) 1347 WP_010887194.1 replicative DNA helicase -
  HAV35_RS11160 (HAV35_11165) pilV 2219483..2219959 (+) 477 WP_034349477.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HAV35_RS11165 (HAV35_11170) - 2220002..2221186 (-) 1185 WP_162177563.1 HTTM domain-containing protein -
  HAV35_RS11170 (HAV35_11175) - 2221553..2221930 (+) 378 WP_010887191.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HAV35_RS11175 (HAV35_11180) - 2221914..2222189 (-) 276 WP_027479532.1 hypothetical protein -
  HAV35_RS11180 (HAV35_11185) - 2222186..2222953 (-) 768 WP_010887189.1 sulfite exporter TauE/SafE family protein -
  HAV35_RS11185 (HAV35_11190) - 2223030..2223713 (-) 684 WP_010887188.1 SDR family oxidoreductase -
  HAV35_RS11190 (HAV35_11195) - 2223818..2224279 (+) 462 WP_341765338.1 glycerophosphodiester phosphodiesterase -
  HAV35_RS16800 - 2224294..2224494 (+) 201 WP_341765339.1 glycerophosphodiester phosphodiesterase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 15369.17 Da        Isoelectric Point: 7.5899

>NTDB_id=430090 HAV35_RS11160 WP_034349477.1 2219483..2219959(+) (pilV) [Deinococcus radiodurans strain BND-54]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN

Nucleotide


Download         Length: 477 bp        

>NTDB_id=430090 HAV35_RS11160 WP_034349477.1 2219483..2219959(+) (pilV) [Deinococcus radiodurans strain BND-54]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)

Pilin A4 (PilA4)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1