Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HAV35_RS07705 Genome accession   NZ_CP050120
Coordinates   1526544..1526984 (-) Length   146 a.a.
NCBI ID   WP_227086020.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BND-54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1521544..1531984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS07685 (HAV35_07690) - 1522330..1523241 (-) 912 WP_034350720.1 cation diffusion facilitator family transporter -
  HAV35_RS07690 (HAV35_07695) - 1523317..1525040 (-) 1724 Protein_1525 dynamin family protein -
  HAV35_RS07695 (HAV35_07700) - 1525102..1525926 (-) 825 WP_231885339.1 prepilin-type cleavage/methylation domain-containing protein -
  HAV35_RS07700 (HAV35_07705) - 1525983..1526543 (-) 561 WP_010887876.1 type II secretion system protein -
  HAV35_RS07705 (HAV35_07710) pilV 1526544..1526984 (-) 441 WP_227086020.1 type II secretion system protein Machinery gene
  HAV35_RS07710 (HAV35_07715) - 1527088..1529262 (-) 2175 WP_243759706.1 hypothetical protein -
  HAV35_RS07715 (HAV35_07720) - 1529396..1530151 (+) 756 WP_027480203.1 DUF4388 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15543.03 Da        Isoelectric Point: 9.4951

>NTDB_id=430083 HAV35_RS07705 WP_227086020.1 1526544..1526984(-) (pilV) [Deinococcus radiodurans strain BND-54]
MTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYRFDTDVKTI
PNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS

Nucleotide


Download         Length: 441 bp        

>NTDB_id=430083 HAV35_RS07705 WP_227086020.1 1526544..1526984(-) (pilV) [Deinococcus radiodurans strain BND-54]
ATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCTGTTCGGCTGGAATCTTGTGCGAAG
CATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCCAGGCGCGCTCGCAGGCGCAGCGGG
GCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGGTTCGACACGGACGTTAAAACCATT
CCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAACATCACTTATCAGGCACCGTACGG
CGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTGGCGATTATGAAATCAGAATCGTGG
GCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1