Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HAV23_RS09090 Genome accession   NZ_CP050116
Coordinates   1803459..1803899 (+) Length   146 a.a.
NCBI ID   WP_227086020.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BNK-50     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1798459..1808899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV23_RS09080 (HAV23_09080) - 1800291..1801046 (-) 756 WP_027480203.1 DUF4388 domain-containing protein -
  HAV23_RS09085 (HAV23_09085) - 1801180..1803438 (+) 2259 WP_162177751.1 hypothetical protein -
  HAV23_RS09090 (HAV23_09090) pilV 1803459..1803899 (+) 441 WP_227086020.1 type II secretion system protein Machinery gene
  HAV23_RS09095 (HAV23_09095) - 1803900..1804460 (+) 561 WP_010887876.1 type II secretion system protein -
  HAV23_RS09100 (HAV23_09100) - 1804511..1805341 (+) 831 WP_233454352.1 type II secretion system protein -
  HAV23_RS09105 (HAV23_09105) - 1805403..1807126 (+) 1724 Protein_1801 dynamin family protein -
  HAV23_RS09110 (HAV23_09110) - 1807202..1808113 (+) 912 WP_034350720.1 cation diffusion facilitator family transporter -
  HAV23_RS16295 - 1808129..1808443 (-) 315 WP_243760092.1 DUF1990 family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15543.03 Da        Isoelectric Point: 9.4951

>NTDB_id=430065 HAV23_RS09090 WP_227086020.1 1803459..1803899(+) (pilV) [Deinococcus radiodurans strain BNK-50]
MTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYRFDTDVKTI
PNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS

Nucleotide


Download         Length: 441 bp        

>NTDB_id=430065 HAV23_RS09090 WP_227086020.1 1803459..1803899(+) (pilV) [Deinococcus radiodurans strain BNK-50]
ATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCTGTTCGGCTGGAATCTTGTGCGAAG
CATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCCAGGCGCGCTCGCAGGCGCAGCGGG
GCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGGTTCGACACGGACGTTAAAACCATT
CCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAACATCACTTATCAGGCACCGTACGG
CGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTGGCGATTATGAAATCAGAATCGTGG
GCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1