Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   BDGL_003412 Genome accession   NC_016603
Coordinates   3666715..3667482 (+) Length   255 a.a.
NCBI ID   YP_004997680.1    Uniprot ID   -
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3661715..3672482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003407 - 3662598..3663887 (+) 1290 YP_004997675.1 putative glycosyl transferase -
  BDGL_003408 pgpB 3663906..3664463 (+) 558 YP_004997676.1 putative phosphatidylglycerophosphatase B (PgpB) -
  BDGL_003409 - 3664563..3664763 (+) 201 YP_004997677.1 hypothetical protein -
  BDGL_003410 ndk 3664877..3665308 (+) 432 YP_004997678.1 nucleoside diphosphate kinase (NDK) -
  BDGL_003411 rlmN 3665432..3666667 (+) 1236 YP_004997679.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BDGL_003412 pilF 3666715..3667482 (+) 768 YP_004997680.1 type 4 fimbrial biogenesis protein Machinery gene
  BDGL_003413 - 3667473..3668264 (+) 792 YP_004997681.1 hypothetical protein -
  BDGL_003414 ispG 3668286..3669197 (+) 912 YP_004997682.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase -
  BDGL_003415 ispG2 3669172..3669399 (+) 228 YP_004997683.1 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase -
  BDGL_003416 hisS 3669396..3670688 (+) 1293 YP_004997684.1 histidyl-tRNA synthetase -
  BDGL_003417 - 3670717..3671415 (+) 699 YP_004997685.1 hypothetical protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28899.79 Da        Isoelectric Point: 8.5994

>NTDB_id=43006 BDGL_003412 YP_004997680.1 3666715..3667482(+) (pilF) [Acinetobacter pittii PHEA-2]
MGIAVAFLVSGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGILLQQEGSKPNLE
KAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDVANAEKTFKQAL
LANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQLRALFPESPEY
QRYLQLQYSTEAVWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=43006 BDGL_003412 YP_004997680.1 3666715..3667482(+) (pilF) [Acinetobacter pittii PHEA-2]
ATGGGGATTGCAGTTGCATTTCTGGTAAGTGGTTGCCAGACAACGCATACGCAAAAAAAAGACCCAGAGAAAGCGGTAAA
GGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGGACTCAGCAAAGCGAGCTCTTGATCAAGCTTTAA
GTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTGCTACAGCAAGAAGGTAGCAAACCCAATTTAGAA
AAAGCAGAACATTATTTTAAAAGAGCAATTTCATCTGAACCGGATAATGCTCAAGCACATAATAATTATGGTACTTATTT
ATATCAAATGGAGCGTTATAATGATGCGGTTGAGCAATTTCGTATTGCTGGCGCAACATTAGGTTATGACCAACGCTATC
AGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTTGCGAATGCTGAAAAAACATTCAAACAAGCACTC
CTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAATTTTTTATTTGCAGCAGCAGATTCCGGCTGCTAC
ACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGGGTGCAAGAGCACTTTGGATTGGTGTAAGAGTGG
CTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAGTTACGTGCTTTGTTCCCGGAAAGTCCAGAATAT
CAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(28-57)

Tetratricopeptide repeat (TPR_16)

(78-123)

Tetratricopeptide repeat (TPR_16)

(138-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

94.902

100

0.949
  pilF Acinetobacter baylyi ADP1

77.075

99.216

0.765

Multiple sequence alignment