Detailed information NTG0430058

Bioinformatically predicted

Overview

• Name: pilV
• Type: Machinery gene
• Locus tag: HAV23_RS05630
• Genome accession: NZ_CP050116
• Coordinates: 1110471..1110947 (-)
• Length: 158 a.a.
• NCBI ID: WP_034349477.1
• Uniprot ID: -
• Organism: Deinococcus radiodurans strain BNK-50
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1093507..1110428	1110471..1110947	flank	43

Gene organization within MGE regions

Location: 1093507..1110947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAV23_RS05560 (HAV23_05560)	-	1093507..1095609 (-)	2103	WP_010887179.1	protein kinase	-
HAV23_RS05565 (HAV23_05565)	-	1095578..1098172 (-)	2595	WP_027479533.1	hypothetical protein	-
HAV23_RS05570 (HAV23_05570)	-	1098176..1098781 (-)	606	WP_010887181.1	OmpA family protein	-
HAV23_RS05575 (HAV23_05575)	-	1098806..1099876 (-)	1071	WP_227085990.1	hypothetical protein	-
HAV23_RS05580 (HAV23_05580)	-	1100045..1103245 (-)	3201	WP_227085991.1	tubulin-like doman-containing protein	-
HAV23_RS05585 (HAV23_05585)	-	1103257..1103586 (-)	330	WP_010887184.1	hypothetical protein	-
HAV23_RS05590 (HAV23_05590)	-	1103586..1104905 (-)	1320	WP_162177565.1	hypothetical protein	-
HAV23_RS05595 (HAV23_05595)	-	1105116..1105910 (-)	795	WP_034349478.1	DUF72 domain-containing protein	-
HAV23_RS05600 (HAV23_05600)	-	1105935..1106612 (-)	678	WP_010887187.1	glycerophosphodiester phosphodiesterase	-
HAV23_RS05605 (HAV23_05605)	-	1106717..1107400 (+)	684	WP_010887188.1	SDR family oxidoreductase	-
HAV23_RS05610 (HAV23_05610)	-	1107477..1108244 (+)	768	WP_010887189.1	sulfite exporter TauE/SafE family protein	-
HAV23_RS05615 (HAV23_05615)	-	1108241..1108516 (+)	276	WP_027479532.1	hypothetical protein	-
HAV23_RS05620 (HAV23_05620)	-	1108500..1108877 (-)	378	WP_010887191.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HAV23_RS05625 (HAV23_05625)	-	1109244..1110428 (+)	1185	WP_162177563.1	HTTM domain-containing protein	-
HAV23_RS05630 (HAV23_05630)	pilV	1110471..1110947 (-)	477	WP_034349477.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 15369.17 Da
• Isoelectric Point: 7.5899

>NTDB_id=430058 HAV23_RS05630 WP_034349477.1 1110471..1110947(-) (pilV) [Deinococcus radiodurans strain BNK-50]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN

Nucleotide

• Length: 477 bp

>NTDB_id=430058 HAV23_RS05630 WP_034349477.1 1110471..1110947(-) (pilV) [Deinococcus radiodurans strain BNK-50]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

• Pilin A4 (PilA4) (39-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1