Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   HAV23_RS03240 Genome accession   NZ_CP050116
Coordinates   624446..625012 (+) Length   188 a.a.
NCBI ID   WP_027480237.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BNK-50     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619446..630012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV23_RS03220 (HAV23_03220) - 621765..622553 (-) 789 WP_027480238.1 APH(3') family aminoglycoside O-phosphotransferase -
  HAV23_RS03225 (HAV23_03225) - 622593..623522 (+) 930 WP_010886715.1 hypothetical protein -
  HAV23_RS03230 (HAV23_03230) - 623519..623893 (+) 375 WP_010886716.1 hypothetical protein -
  HAV23_RS03235 (HAV23_03235) - 623995..624357 (+) 363 WP_010886717.1 hypothetical protein -
  HAV23_RS03240 (HAV23_03240) ddrB 624446..625012 (+) 567 WP_027480237.1 single-stranded DNA-binding protein DdrB Machinery gene
  HAV23_RS03245 (HAV23_03245) - 625193..627130 (-) 1938 WP_034350791.1 peptidylprolyl isomerase -
  HAV23_RS03255 (HAV23_03255) - 627502..627981 (+) 480 WP_027480236.1 hypothetical protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20830.32 Da        Isoelectric Point: 9.2754

>NTDB_id=430055 HAV23_RS03240 WP_027480237.1 624446..625012(+) (ddrB) [Deinococcus radiodurans strain BNK-50]
MLQIEFITDLGARVTVNVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEADFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGAAGNGQGRPAPQGQP
AQARPQATAARPAARPPVQPGQEEETPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=430055 HAV23_RS03240 WP_027480237.1 624446..625012(+) (ddrB) [Deinococcus radiodurans strain BNK-50]
ATGTTGCAGATTGAATTTATCACCGACCTGGGTGCGCGGGTCACGGTGAACGTGGAGCATGAAAGCCGGTTGCTGGACGT
ACAGCGCCACTATGGCCGCCTGGGCTGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAGAACGAGG
CCGACTTCGACTGGTCGCTGATCGGCGCCCGCAAGTGGAAGAGCCCCGAGGGCGAAGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTCGAAGCCGTGGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAGTACAGCCGCGGCGC
CAAGGTCAGCGACCCGCAGCACGTGCGCGAAAAGGCCGATGGCGACATCGAATACGTCAGCCTCGCCATCTTCCGCGGTG
GCAAGCGGCAGGAGCGCTACGCGGTGCCCGGCGGCGCGGCGGGGAACGGTCAGGGTCGCCCGGCGCCCCAGGGACAGCCC
GCCCAGGCCCGTCCCCAGGCCACTGCCGCTCGCCCCGCCGCTCGGCCCCCGGTGCAGCCCGGTCAGGAAGAAGAAACGCC
GTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1