Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   BDGL_003178 Genome accession   NC_016603
Coordinates   3411288..3411614 (+) Length   108 a.a.
NCBI ID   YP_004997446.1    Uniprot ID   F0KKN7
Organism   Acinetobacter pittii PHEA-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3406288..3416614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003173 hemC 3406890..3407819 (+) 930 YP_004997441.1 porphobilinogen deaminase -
  BDGL_003174 hemD 3407823..3408590 (+) 768 YP_004997442.1 uroporphyrinogen-III synthase -
  BDGL_003175 - 3408599..3409441 (+) 843 YP_004997443.1 hypothetical protein -
  BDGL_003176 - 3409532..3410644 (+) 1113 YP_004997444.1 hypothetical protein -
  BDGL_003177 ysmA 3410710..3411093 (+) 384 YP_004997445.1 putative thioesterase -
  BDGL_003178 hns 3411288..3411614 (+) 327 YP_004997446.1 putative DNA binding protein Regulator
  BDGL_003179 - 3411949..3412692 (+) 744 YP_004997447.1 putative generaltype II secretion pathway protein -
  BDGL_003180 - 3412692..3413528 (+) 837 YP_004997448.1 putative general secretion pathway protein -
  BDGL_003181 xcpQ 3413570..3415840 (+) 2271 YP_004997449.1 putative general secretion pathway protein -
  BDGL_003182 - 3415881..3416507 (+) 627 YP_004997450.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=42997 BDGL_003178 YP_004997446.1 3411288..3411614(+) (hns) [Acinetobacter pittii PHEA-2]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=42997 BDGL_003178 YP_004997446.1 3411288..3411614(+) (hns) [Acinetobacter pittii PHEA-2]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KKN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment