Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NCK_RS13395 Genome accession   NZ_CP050078
Coordinates   2816581..2817204 (-) Length   207 a.a.
NCBI ID   WP_012132965.1    Uniprot ID   A8AIC0
Organism   Citrobacter koseri strain NJ     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2811581..2822204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCK_RS13380 (NCK_13370) helD 2811822..2813876 (-) 2055 WP_012132961.1 DNA helicase IV -
  NCK_RS13385 (NCK_13375) - 2814000..2814446 (+) 447 WP_012132963.1 YccF domain-containing protein -
  NCK_RS13390 (NCK_13380) yccS 2814465..2816612 (+) 2148 WP_112002332.1 YccS family putative transporter -
  NCK_RS13395 (NCK_13385) sxy/tfoX 2816581..2817204 (-) 624 WP_012132965.1 TfoX/Sxy family DNA transformation protein Regulator
  NCK_RS13400 (NCK_13390) sulA 2817421..2817930 (+) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  NCK_RS13405 (NCK_13395) ompA 2818286..2819332 (+) 1047 WP_219935646.1 porin OmpA -
  NCK_RS13410 (NCK_13400) matP 2819407..2819859 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  NCK_RS13415 (NCK_13405) - 2820045..2821805 (+) 1761 WP_104868827.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23953.68 Da        Isoelectric Point: 9.4100

>NTDB_id=429930 NCK_RS13395 WP_012132965.1 2816581..2817204(-) (sxy/tfoX) [Citrobacter koseri strain NJ]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKILYALEGAIAGVHEAALPAVRRQELAEWAQSLTPEHQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=429930 NCK_RS13395 WP_012132965.1 2816581..2817204(-) (sxy/tfoX) [Citrobacter koseri strain NJ]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCACAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAGCTATACCTGCGTGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAGCTGGTGCTTTTATCACAGTATTCGCTGGATGCTGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTAACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACACTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAATTCTCTATGCGTTAGAAGGGGCGATTGCTGGCGTACATGAAGCGGCGCTCCCGGCAGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCACCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AIC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.414

98.068

0.71