Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   BDGL_003088 Genome accession   NC_016603
Coordinates   3314181..3315335 (-) Length   384 a.a.
NCBI ID   YP_004997356.1    Uniprot ID   -
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3309181..3320335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003084 - 3310336..3310989 (+) 654 YP_004997352.1 hypothetical protein -
  BDGL_003085 - 3311093..3312013 (+) 921 YP_004997353.1 hypothetical protein -
  BDGL_003086 yrdC 3312406..3312975 (-) 570 YP_004997354.1 putative SUA5/YciO/YrdC/YwlC family protein -
  BDGL_003087 dprA 3313027..3314160 (-) 1134 YP_004997355.1 putative Rossmann-fold nucleotide-binding protein involved in DNA uptake (smf) Machinery gene
  BDGL_003088 tsaP 3314181..3315335 (-) 1155 YP_004997356.1 hypothetical protein Machinery gene
  BDGL_003089 def 3315458..3315988 (+) 531 YP_004997357.1 peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) -
  BDGL_003090 - 3316032..3316457 (+) 426 YP_004997358.1 hypothetical protein -
  BDGL_003091 oprC 3316530..3318644 (+) 2115 YP_004997359.1 putative outer membrane copper receptor -
  BDGL_003092 - 3318698..3318904 (+) 207 YP_004997360.1 hypothetical protein -
  BDGL_003093 - 3318972..3320186 (-) 1215 YP_004997361.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42572.39 Da        Isoelectric Point: 7.2978

>NTDB_id=42992 BDGL_003088 YP_004997356.1 3314181..3315335(-) (tsaP) [Acinetobacter pittii PHEA-2]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFSTVAETYAASPNHNPPSLRSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPADAIEHTPYVVGTADQRVLAAKGQTIYARGQGLVNGQRYAVYREGEPYYFTDSKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=42992 BDGL_003088 YP_004997356.1 3314181..3315335(-) (tsaP) [Acinetobacter pittii PHEA-2]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTGGCACTTTTTAC
AGGGGTTGCATTCAGTACGGTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAGAAGTAATGCAC
CACATGTCTACGTAGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTACCCAGGTGATCGATTACTGCTGTGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAGCATATCAAACAATGGTTAGAA
CACAGCACAATTTTGCCAGCCGACGCAATTGAACACACTCCTTATGTAGTCGGTACTGCTGATCAACGTGTACTGGCGGC
AAAAGGTCAGACTATTTATGCGCGCGGACAAGGTTTAGTTAATGGTCAACGTTATGCAGTTTATCGTGAAGGCGAACCTT
ATTATTTCACAGACAGTAAAGGTAAAAAGCATAGTCTAGGTATTGAGCTGCAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTGATGCCAGA
AGAAGAAGCAACCTTACCTACTTTGTTTTATCCGGTGGATGCCACTCAGGTGACGGACGGCGGCAAAATTATTCGTGTAA
TGGGATCAATTGGTACTGCTGCCAAAAATAGTGTGGTCACTTTAGATCGCGGTACGGCACAAGGTATTCAAGTAGGACAA
GTTTTTGATATTACGCAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATCCAGCCACCCCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

90.104

100

0.901

Multiple sequence alignment