Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BDGL_002491 Genome accession   NC_016603
Coordinates   2692011..2692895 (-) Length   294 a.a.
NCBI ID   YP_004996759.1    Uniprot ID   F0KPY2
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2687011..2697895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002488 miaB 2688896..2690347 (+) 1452 YP_004996756.1 putative tRNA-i(6)A37 modification enzyme (MiaB) -
  BDGL_002489 phoL 2690430..2691473 (+) 1044 YP_004996757.1 phosphate starvation-inducible protein (PhoH-like) -
  BDGL_002490 - 2691483..2691959 (+) 477 YP_004996758.1 hypothetical protein -
  BDGL_002491 tonB2 2692011..2692895 (-) 885 YP_004996759.1 periplasmic protein TonB Machinery gene
  BDGL_002492 - 2693128..2693799 (+) 672 YP_004996760.1 hypothetical protein -
  BDGL_002493 - 2693958..2694671 (+) 714 YP_004996761.1 hypothetical protein -
  BDGL_002494 xpt 2694744..2695319 (+) 576 YP_004996762.1 xanthine phosphoribosyltransferase -
  BDGL_002495 - 2695370..2695993 (-) 624 YP_004996763.1 NAD(P)H:quinone oxidoreductase, type IV -
  BDGL_002496 rbn 2696334..2696969 (+) 636 YP_004996764.1 putative ribonuclease (Rbn) -
  BDGL_002497 rbn 2697035..2697577 (+) 543 YP_004996765.1 putative ribonuclease (Rbn) -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33654.13 Da        Isoelectric Point: 7.0427

>NTDB_id=42973 BDGL_002491 YP_004996759.1 2692011..2692895(-) (tonB2) [Acinetobacter pittii PHEA-2]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWQKQADASQRNKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=42973 BDGL_002491 YP_004996759.1 2692011..2692895(-) (tonB2) [Acinetobacter pittii PHEA-2]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGAACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAACAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCTATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGCACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KPY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878

Multiple sequence alignment