Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G9P52_RS05875 Genome accession   NZ_CP050047
Coordinates   1186501..1187130 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 90-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181501..1192130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P52_RS05860 (G9P52_05845) helD 1181743..1183797 (-) 2055 WP_000420533.1 DNA helicase IV -
  G9P52_RS05865 (G9P52_05850) yccF 1183920..1184366 (+) 447 WP_001261231.1 YccF domain-containing protein -
  G9P52_RS05870 (G9P52_05855) yccS 1184376..1186538 (+) 2163 WP_000875044.1 YccS family putative transporter -
  G9P52_RS05875 (G9P52_05860) sxy/tfoX 1186501..1187130 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G9P52_RS05880 (G9P52_05865) sulA 1187349..1187858 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G9P52_RS05885 (G9P52_05870) ompA 1188215..1189267 (+) 1053 WP_000750419.1 porin OmpA -
  G9P52_RS05890 (G9P52_05875) matP 1189342..1189794 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  G9P52_RS05895 (G9P52_05880) ycbZ 1189980..1191740 (+) 1761 WP_188027961.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=429713 G9P52_RS05875 WP_000839153.1 1186501..1187130(-) (sxy/tfoX) [Escherichia coli strain 90-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=429713 G9P52_RS05875 WP_000839153.1 1186501..1187130(-) (sxy/tfoX) [Escherichia coli strain 90-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1