Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VFU_RS14395 Genome accession   NC_016602
Coordinates   3092884..3093402 (-) Length   172 a.a.
NCBI ID   WP_014205765.1    Uniprot ID   A0A0Q2V091
Organism   Vibrio furnissii NCTC 11218     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087884..3098402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS14370 (vfu_A02959) rimM 3087970..3088524 (-) 555 WP_004723882.1 ribosome maturation factor RimM -
  VFU_RS14375 (vfu_A02960) rpsP 3088552..3088800 (-) 249 WP_004723879.1 30S ribosomal protein S16 -
  VFU_RS14380 (vfu_A02961) ffh 3089026..3090405 (-) 1380 WP_004723876.1 signal recognition particle protein -
  VFU_RS14385 (vfu_A02963) - 3090618..3091412 (+) 795 WP_014205764.1 cytochrome C assembly family protein -
  VFU_RS14390 (vfu_A02964) - 3091503..3092777 (+) 1275 WP_004723872.1 HlyC/CorC family transporter -
  VFU_RS14395 (vfu_A02965) luxS 3092884..3093402 (-) 519 WP_014205765.1 S-ribosylhomocysteine lyase Regulator
  VFU_RS14400 (vfu_A02966) - 3093428..3094033 (-) 606 WP_041942627.1 hypothetical protein -
  VFU_RS14405 (vfu_A02967) gshA 3094035..3095600 (-) 1566 WP_004723866.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18856.59 Da        Isoelectric Point: 4.6766

>NTDB_id=42952 VFU_RS14395 WP_014205765.1 3092884..3093402(-) (luxS) [Vibrio furnissii NCTC 11218]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=42952 VFU_RS14395 WP_014205765.1 3092884..3093402(-) (luxS) [Vibrio furnissii NCTC 11218]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTCACCATGCCAAACAAAGACATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCCGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGCACCGGGTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAGCAAGTCGCTGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGCCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCAGGCATTCAGGTCAACAAGAACGACGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2V091

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment