Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   G8O91_RS15240 Genome accession   NZ_CP050026
Coordinates   1605228..1605437 (-) Length   69 a.a.
NCBI ID   WP_014930816.1    Uniprot ID   -
Organism   Listeria monocytogenes strain MB5     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1600228..1610437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O91_RS08275 - 1601802..1603421 (+) 1620 WP_014600447.1 class I SAM-dependent DNA methyltransferase -
  G8O91_RS08280 - 1603414..1604526 (+) 1113 WP_060934451.1 restriction endonuclease subunit S -
  G8O91_RS08285 - 1604666..1605199 (-) 534 WP_014930817.1 hypothetical protein -
  G8O91_RS15240 ccrB 1605228..1605437 (-) 210 WP_014930816.1 recombinase zinc beta ribbon domain-containing protein Machinery gene
  G8O91_RS08295 - 1605419..1605868 (-) 450 WP_223168478.1 recombinase family protein -
  G8O91_RS08300 rlmH 1606307..1606786 (-) 480 WP_008946708.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  G8O91_RS08305 htrA 1607473..1608978 (-) 1506 WP_014930814.1 serine protease HtrA -
  G8O91_RS08310 - 1609076..1609906 (-) 831 WP_003722911.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7910.99 Da        Isoelectric Point: 10.3845

>NTDB_id=429460 G8O91_RS15240 WP_014930816.1 1605228..1605437(-) (ccrB) [Listeria monocytogenes strain MB5]
MAANNVINRLKDGTKKRIRYYSCFQFRNKGASVCHANSIRADQAEQFVAERLKETVQHPQIIKEVNSST

Nucleotide


Download         Length: 210 bp        

>NTDB_id=429460 G8O91_RS15240 WP_014930816.1 1605228..1605437(-) (ccrB) [Listeria monocytogenes strain MB5]
ATGGCAGCAAATAATGTGATCAATCGACTAAAGGATGGAACCAAAAAACGTATTCGGTATTATTCCTGTTTTCAATTTCG
AAATAAAGGAGCGAGTGTTTGCCATGCGAATTCAATCCGAGCAGATCAAGCAGAACAGTTTGTGGCTGAAAGGTTGAAGG
AAACCGTTCAACACCCACAAATTATAAAAGAAGTTAATTCAAGCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

58.462

94.203

0.551