Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IF754_RS06225 Genome accession   NZ_CP062405
Coordinates   1243236..1243862 (+) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain NAS_NP_209     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1238236..1248862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF754_RS06195 (IF754_06160) - 1239221..1239553 (-) 333 WP_000516800.1 DUF4889 domain-containing protein -
  IF754_RS06200 (IF754_06165) - 1239637..1240782 (-) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  IF754_RS06210 (IF754_06175) gpsB 1241433..1241777 (-) 345 WP_001286320.1 cell division regulator GpsB -
  IF754_RS06215 (IF754_06180) - 1241791..1242354 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  IF754_RS06220 (IF754_06185) - 1242347..1242697 (-) 351 WP_001000803.1 YppE family protein -
  IF754_RS06225 (IF754_06190) recU 1243236..1243862 (+) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  IF754_RS06230 (IF754_06195) - 1243859..1246009 (+) 2151 WP_000138342.1 transglycosylase domain-containing protein -
  IF754_RS06235 (IF754_06200) - 1246559..1246900 (-) 342 WP_000182035.1 YpoC family protein -
  IF754_RS06240 (IF754_06205) nth 1246905..1247564 (-) 660 WP_000253765.1 endonuclease III -
  IF754_RS06245 (IF754_06210) - 1247554..1248240 (-) 687 WP_000362222.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=429438 IF754_RS06225 WP_001108885.1 1243236..1243862(+) (recU) [Staphylococcus aureus strain NAS_NP_209]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=429438 IF754_RS06225 WP_001108885.1 1243236..1243862(+) (recU) [Staphylococcus aureus strain NAS_NP_209]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529