Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ABTJ_RS03025 | Genome accession | NC_017847 |
| Coordinates | 626627..627142 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii MDR-TJ | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 621627..632142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABTJ_RS03000 (ABTJ_00610) | - | 622173..623816 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| ABTJ_RS03005 (ABTJ_00611) | - | 623809..624294 (+) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| ABTJ_RS03010 (ABTJ_00612) | - | 624377..624730 (+) | 354 | WP_000457787.1 | multidrug efflux SMR transporter | - |
| ABTJ_RS03015 (ABTJ_00613) | - | 624773..625216 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| ABTJ_RS03020 (ABTJ_00614) | - | 625343..626518 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ABTJ_RS03025 (ABTJ_00615) | fimT | 626627..627142 (-) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| ABTJ_RS03030 (ABTJ_00616) | omp38 | 627524..628594 (+) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| ABTJ_RS20950 (ABTJ_00617) | - | 628719..628862 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| ABTJ_RS03040 (ABTJ_00618) | - | 628881..630086 (-) | 1206 | WP_000512707.1 | RtcB family protein | - |
| ABTJ_RS03045 (ABTJ_00619) | - | 630363..631823 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=42942 ABTJ_RS03025 WP_000477147.1 626627..627142(-) (fimT) [Acinetobacter baumannii MDR-TJ]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=42942 ABTJ_RS03025 WP_000477147.1 626627..627142(-) (fimT) [Acinetobacter baumannii MDR-TJ]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |