Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HAP40_RS20990 Genome accession   NZ_CP050022
Coordinates   4427304..4427411 (-) Length   35 a.a.
NCBI ID   WP_334270704.1    Uniprot ID   A0AAJ6N4E3
Organism   Bradyrhizobium sp. 1(2017) strain 63S1MB     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4422304..4432411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP40_RS20970 (HAP40_19310) - 4422741..4424807 (-) 2067 WP_246741066.1 hypothetical protein -
  HAP40_RS20975 (HAP40_19305) - 4424798..4425769 (-) 972 WP_246741065.1 toprim domain-containing protein -
  HAP40_RS37355 - 4425817..4426032 (-) 216 WP_080586812.1 helix-turn-helix domain-containing protein -
  HAP40_RS20980 (HAP40_19295) - 4426101..4426586 (+) 486 WP_166816017.1 hypothetical protein -
  HAP40_RS20985 (HAP40_19290) - 4426690..4427001 (+) 312 WP_166816015.1 helix-turn-helix transcriptional regulator -
  HAP40_RS20990 (HAP40_37440) hns 4427304..4427411 (-) 108 WP_334270704.1 H-NS family nucleoid-associated regulatory protein Regulator
  HAP40_RS20995 (HAP40_19280) - 4427411..4428022 (+) 612 WP_166816013.1 hypothetical protein -
  HAP40_RS21000 (HAP40_19275) - 4428086..4428694 (-) 609 WP_166816011.1 class I SAM-dependent methyltransferase -
  HAP40_RS21005 (HAP40_19270) - 4428708..4428917 (+) 210 Protein_4173 SOS response-associated peptidase -
  HAP40_RS21010 (HAP40_19265) - 4429466..4429729 (+) 264 WP_166816009.1 hypothetical protein -
  HAP40_RS21015 (HAP40_19260) - 4431314..4432297 (-) 984 WP_166816007.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 35 a.a.        Molecular weight: 4217.83 Da        Isoelectric Point: 12.2111

>NTDB_id=429295 HAP40_RS20990 WP_334270704.1 4427304..4427411(-) (hns) [Bradyrhizobium sp. 1(2017) strain 63S1MB]
MQIWSGRGKQPRWLGPQIQAGRQLDDFLIDRTRRH

Nucleotide


Download         Length: 108 bp        

>NTDB_id=429295 HAP40_RS20990 WP_334270704.1 4427304..4427411(-) (hns) [Bradyrhizobium sp. 1(2017) strain 63S1MB]
ATGCAGATTTGGTCCGGCCGTGGGAAGCAACCCCGATGGCTTGGGCCGCAAATTCAAGCTGGCAGACAGCTGGATGATTT
CTTGATCGATCGGACCCGACGCCACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

60.714

80

0.486