Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IF765_RS06005 Genome accession   NZ_CP062403
Coordinates   1211338..1212420 (-) Length   360 a.a.
NCBI ID   WP_064129980.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_052     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1206338..1217420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF765_RS05985 (IF765_05985) - 1206947..1207051 (-) 105 WP_001790092.1 hypothetical protein -
  IF765_RS05990 (IF765_05990) secA 1207093..1209624 (-) 2532 WP_000506408.1 preprotein translocase subunit SecA -
  IF765_RS05995 (IF765_05995) raiA 1210038..1210610 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  IF765_RS06000 (IF765_06000) - 1210671..1211345 (-) 675 WP_001057965.1 ComF family protein -
  IF765_RS06005 (IF765_06005) comFA 1211338..1212420 (-) 1083 WP_064129980.1 DEAD/DEAH box helicase Machinery gene
  IF765_RS06010 (IF765_06010) fakB1 1212784..1213650 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  IF765_RS06015 (IF765_06015) - 1213794..1214435 (+) 642 WP_064129979.1 YigZ family protein -
  IF765_RS06020 (IF765_06020) - 1214606..1215661 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  IF765_RS06025 (IF765_06025) - 1215979..1217049 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42038.46 Da        Isoelectric Point: 9.6803

>NTDB_id=429279 IF765_RS06005 WP_064129980.1 1211338..1212420(-) (comFA) [Staphylococcus aureus strain NAS_OP_052]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKNQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=429279 IF765_RS06005 WP_064129980.1 1211338..1212420(-) (comFA) [Staphylococcus aureus strain NAS_OP_052]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGAATCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.348

94.167

0.361