Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HAP28_RS09425 Genome accession   NZ_CP050009
Coordinates   2023516..2024145 (+) Length   209 a.a.
NCBI ID   WP_043001157.1    Uniprot ID   A0A3S7DAA7
Organism   Citrobacter sp. Y3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2018516..2029145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP28_RS09405 (HAP28_09405) - 2018903..2020663 (-) 1761 WP_043001160.1 Lon protease family protein -
  HAP28_RS09410 (HAP28_09410) matP 2020849..2021301 (+) 453 WP_043001159.1 macrodomain Ter protein MatP -
  HAP28_RS09415 (HAP28_09415) ompA 2021378..2022433 (-) 1056 WP_043001975.1 porin OmpA -
  HAP28_RS09420 (HAP28_09420) sulA 2022789..2023298 (-) 510 WP_043001158.1 SOS-induced cell division inhibitor SulA -
  HAP28_RS09425 (HAP28_09425) sxy/tfoX 2023516..2024145 (+) 630 WP_043001157.1 TfoX/Sxy family DNA transformation protein Regulator
  HAP28_RS09430 (HAP28_09430) yccS 2024099..2026261 (-) 2163 WP_109740139.1 YccS family putative transporter -
  HAP28_RS09435 (HAP28_09435) - 2026268..2026726 (-) 459 WP_043001155.1 YccF domain-containing protein -
  HAP28_RS09440 (HAP28_09440) helD 2026850..2028904 (+) 2055 WP_109740140.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24229.11 Da        Isoelectric Point: 9.4514

>NTDB_id=429210 HAP28_RS09425 WP_043001157.1 2023516..2024145(+) (sxy/tfoX) [Citrobacter sp. Y3]
MKIHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIRNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDTLWRDQQQLIQLSKFSLDAALQEKLSRSSQQRLKDLPNMTFHLESLLNEAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPVPMSVEKSE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=429210 HAP28_RS09425 WP_043001157.1 2023516..2024145(+) (sxy/tfoX) [Citrobacter sp. Y3]
ATGAAAATTCACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCACTTCCGCTCACT
GTTTGGCAGTTACAGTCTGACAATCAGGAATACCGTCTTTGCGATGGTTGCCAATGGGGAGCTCTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGCGTGCAACATTCCCCGGTCTGGCTGACGTTTCTTAAACGCGGGCGTCCGGTCATGCTTAAT
TATTATCAGGTTGATGACACTCTTTGGCGCGACCAGCAACAGTTGATCCAGTTGTCGAAGTTTTCGCTGGATGCCGCGTT
GCAGGAGAAGTTGTCCCGCAGTTCTCAGCAGCGGCTTAAGGATCTCCCCAATATGACCTTTCATCTGGAGAGTTTGCTGA
ATGAAGCGGGGATCTACGACGTCGCTACCCTGCGAATGCTGGGCGCTAAAATGTGCTGGTTGCGACTGCGACAAATGAAC
AAATCCATCACTGACAAGGTGCTGTTTAATCTTGAAGGGGCTATTTATGGTATCCATGAAGCGGCGCTCCCGGCGATACG
CCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCACCGGTGCCGATGTCGGTGGAGAAGAGTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S7DAA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.5

95.694

0.675