Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G9Q38_RS14370 Genome accession   NZ_CP049990
Coordinates   2997192..2998460 (-) Length   422 a.a.
NCBI ID   WP_166132135.1    Uniprot ID   -
Organism   Pusillimonas sp. DMV24BSW_D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2992192..3003460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9Q38_RS14345 (G9Q38_14345) thiL 2992269..2993222 (-) 954 WP_166132131.1 thiamine-phosphate kinase -
  G9Q38_RS14350 (G9Q38_14350) nusB 2993255..2993746 (-) 492 WP_228276147.1 transcription antitermination factor NusB -
  G9Q38_RS14355 (G9Q38_14355) ribH 2993733..2994257 (-) 525 WP_166132132.1 6,7-dimethyl-8-ribityllumazine synthase -
  G9Q38_RS14360 (G9Q38_14360) ribBA 2994271..2995431 (-) 1161 WP_166132133.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  G9Q38_RS14365 (G9Q38_14365) - 2995616..2997172 (+) 1557 WP_166132134.1 CYTH and CHAD domain-containing protein -
  G9Q38_RS14370 (G9Q38_14370) pilA 2997192..2998460 (-) 1269 WP_166132135.1 signal recognition particle-docking protein FtsY Machinery gene
  G9Q38_RS14375 (G9Q38_14375) rsmD 2998544..2999131 (+) 588 WP_166132136.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G9Q38_RS14380 (G9Q38_14380) coaD 2999187..2999690 (+) 504 WP_114421532.1 pantetheine-phosphate adenylyltransferase -
  G9Q38_RS14385 (G9Q38_14385) - 2999702..2999962 (+) 261 WP_166132137.1 YfhL family 4Fe-4S dicluster ferredoxin -
  G9Q38_RS14390 (G9Q38_14390) - 2999992..3000366 (-) 375 WP_370523895.1 MOSC N-terminal beta barrel domain-containing protein -
  G9Q38_RS14395 (G9Q38_14395) - 3000414..3003029 (-) 2616 WP_166132139.1 AsmA family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 44607.15 Da        Isoelectric Point: 4.3700

>NTDB_id=429202 G9Q38_RS14370 WP_166132135.1 2997192..2998460(-) (pilA) [Pusillimonas sp. DMV24BSW_D]
MFSFFKRKSKEAAQESSIVKDEVEVSQEETGRAASVETDTDSLAMEGAAAEAEAEAEAEAEAEAEAEAEAEAEAACVKAE
ESSVKQENAVVDDETSEAETPADETPVQDVATAQVEPEKRSWFSRLRQGLSRTGQNLGGLFVGVKVDESLFEELETALIM
ADAGMDATTSLLTALRARVKKERLTDAQAVKAALQEILAEHLRPLEKTFPVGRHKPLVMMIAGVNGAGKTTSIGKLAYNF
QLQGHRVLLAAGDTFRAAAREQLMAWGERNNVTVIAQDGGDPAAVAFDAVNAGRARDTDIVMVDTAGRLPTQLHLMEELK
KIKRVIGKADAQAPHEVLLVVDGNTGQNAIAQIRAFDAAIGLTGLVVTKLDGTAKGGTLAAVAAGAQGVRPVPVYWIGVG
EGLEDLQPFVASEFAAALLGSE

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=429202 G9Q38_RS14370 WP_166132135.1 2997192..2998460(-) (pilA) [Pusillimonas sp. DMV24BSW_D]
ATGTTTAGTTTCTTTAAACGTAAATCAAAAGAAGCCGCGCAGGAATCATCAATTGTAAAAGACGAGGTTGAGGTTTCTCA
AGAAGAAACCGGGAGGGCCGCGTCAGTTGAGACGGACACCGACAGTCTGGCCATGGAGGGTGCTGCAGCGGAAGCCGAAG
CCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAAGCCGCCTGTGTCAAGGCTGAG
GAATCGAGCGTTAAGCAAGAGAACGCGGTCGTTGATGACGAAACGTCTGAGGCTGAAACGCCAGCGGACGAAACGCCCGT
GCAGGACGTCGCGACGGCTCAGGTCGAACCCGAGAAAAGATCCTGGTTTTCCCGCCTCCGGCAAGGGCTGTCGCGCACAG
GCCAGAATTTGGGCGGCCTGTTCGTCGGCGTTAAAGTGGATGAAAGTCTATTTGAGGAATTGGAAACCGCTTTGATCATG
GCGGACGCCGGGATGGACGCCACAACGTCGCTTTTAACTGCTTTGCGGGCACGCGTTAAAAAAGAGCGGCTTACCGATGC
ACAAGCAGTCAAGGCGGCGTTGCAGGAAATTTTGGCCGAGCATTTACGCCCTCTCGAGAAAACATTTCCAGTGGGGCGGC
ATAAGCCTTTGGTCATGATGATCGCGGGTGTCAATGGCGCGGGTAAAACGACCTCAATCGGGAAGTTGGCTTATAACTTT
CAGCTTCAGGGGCACCGGGTCTTGTTGGCGGCCGGCGATACCTTTCGCGCGGCTGCACGTGAGCAATTAATGGCTTGGGG
CGAGCGCAACAATGTGACCGTTATTGCGCAAGACGGTGGTGATCCGGCCGCAGTTGCATTCGACGCCGTGAATGCAGGGC
GTGCGCGCGACACTGATATTGTGATGGTGGATACGGCCGGTCGCTTACCGACCCAATTGCACCTCATGGAAGAACTAAAA
AAAATCAAACGTGTGATCGGCAAAGCGGATGCGCAAGCGCCTCATGAAGTGTTGTTGGTGGTGGATGGCAACACGGGTCA
GAATGCGATTGCGCAAATTCGCGCTTTTGATGCGGCCATCGGCCTTACCGGACTGGTTGTGACCAAACTCGACGGCACGG
CAAAAGGTGGAACGCTGGCGGCGGTGGCCGCCGGTGCGCAGGGCGTGCGCCCGGTACCAGTGTATTGGATCGGCGTAGGT
GAAGGTTTGGAAGACTTGCAACCTTTTGTCGCGTCGGAGTTTGCGGCCGCCTTACTGGGTAGTGAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(217-419)

SRP54-type protein, helical bundle domain (SRP54_N)

(137-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.583

100

0.514