Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   G9Q37_RS18640 Genome accession   NZ_CP049989
Coordinates   3924887..3926503 (+) Length   538 a.a.
NCBI ID   WP_166229621.1    Uniprot ID   A0A6G8ILY0
Organism   Hydrogenophaga crocea strain BA0156     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3919887..3931503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9Q37_RS18615 (G9Q37_18615) argS 3920243..3921916 (+) 1674 WP_166229613.1 arginine--tRNA ligase -
  G9Q37_RS18620 (G9Q37_18620) - 3921932..3922663 (+) 732 WP_166229615.1 SPOR domain-containing protein -
  G9Q37_RS18625 (G9Q37_18625) - 3922742..3923362 (+) 621 WP_166229617.1 thiol:disulfide interchange protein DsbA/DsbL -
  G9Q37_RS18630 (G9Q37_18630) lptA 3923458..3924093 (+) 636 WP_166229619.1 lipopolysaccharide transport periplasmic protein LptA -
  G9Q37_RS18635 (G9Q37_18635) lptB 3924090..3924887 (+) 798 WP_420810298.1 LPS export ABC transporter ATP-binding protein -
  G9Q37_RS18640 (G9Q37_18640) rpoN/rpoN1 3924887..3926503 (+) 1617 WP_166229621.1 RNA polymerase factor sigma-54 Machinery gene
  G9Q37_RS18645 (G9Q37_18645) - 3926500..3927813 (+) 1314 WP_166229623.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  G9Q37_RS18650 (G9Q37_18650) - 3927815..3928249 (+) 435 WP_166229625.1 PIN domain-containing protein -
  G9Q37_RS18655 (G9Q37_18655) - 3928239..3929366 (+) 1128 WP_166229627.1 toxin-antitoxin system YwqK family antitoxin -
  G9Q37_RS18660 (G9Q37_18660) - 3929394..3931019 (-) 1626 WP_166229629.1 FMN-binding glutamate synthase family protein -
  G9Q37_RS18665 (G9Q37_18665) - 3931177..3931386 (+) 210 WP_166229631.1 hypothetical protein -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 58749.10 Da        Isoelectric Point: 4.5660

>NTDB_id=429186 G9Q37_RS18640 WP_166229621.1 3924887..3926503(+) (rpoN/rpoN1) [Hydrogenophaga crocea strain BA0156]
MKQSLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERSEDGSEREAFGVDGAADAPVSAGEQIADAAL
VATAGTGDAVADSADAGDADALEARLDGASPVEESWEGDGSVEIAPDDSEWGGDAPARTSGSGDDDETASAAELARSQVS
LQDHLHEQARCMRLGDEDRAALVFLIESLNDDGYLDDSLEALVPAFLQLLGRPLPDDPEAALEAREAAEQQLRTALQWLQ
HMDPPGVGARDLAECLRLQILELRNTPEARAALALCGQPLELVAKRDIRKLCSACRLDDETVRAALALIARLEPKPGRRF
VDVERNIVVPDVIVTRAGRGFKVILNPDVMPRLRVHDVYANALRQNRGGRDSGGEGGHAAMQQRLQEARWFIKNIQQRFD
TILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETGGNASST
AVRALLKQFIAAEEASKPLSDNQLSDLLKEQGIECARRTVAKYREAMRIAPANLRKSL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=429186 G9Q37_RS18640 WP_166229621.1 3924887..3926503(+) (rpoN/rpoN1) [Hydrogenophaga crocea strain BA0156]
ATGAAGCAGAGCCTGTCGCTGCGCGTCTCCCAGCACCTGGCGCTCACGCCCCAGCTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTGGAGATGGCGCAGGAGGTCGAGCAGATGCTCGACGAAAACCCCTTTCTGGAGCGCAGCGAGGACGGCA
GCGAACGCGAGGCCTTCGGCGTCGACGGCGCGGCCGACGCGCCGGTGAGCGCGGGCGAGCAGATCGCCGACGCGGCTTTG
GTGGCCACGGCCGGCACCGGCGATGCGGTGGCCGACAGCGCCGACGCGGGCGATGCCGACGCGCTCGAGGCGCGCCTGGA
CGGCGCGAGCCCGGTCGAAGAAAGCTGGGAGGGCGACGGCTCGGTGGAGATCGCGCCCGACGACAGCGAGTGGGGCGGTG
ACGCGCCCGCGCGCACCAGCGGCAGCGGCGACGACGACGAGACCGCGAGCGCGGCCGAGCTCGCGCGCTCGCAGGTCTCG
CTGCAGGACCACCTGCACGAGCAGGCGCGCTGCATGCGCCTGGGCGACGAAGACCGCGCGGCCCTGGTCTTCCTGATCGA
ATCGCTCAACGACGACGGCTACCTCGACGACAGCCTCGAGGCCCTGGTGCCCGCGTTCCTGCAACTGCTGGGCCGTCCCT
TGCCCGACGACCCCGAGGCCGCGCTCGAAGCGCGCGAGGCCGCCGAGCAGCAGTTGCGCACCGCGCTGCAGTGGCTGCAG
CACATGGACCCGCCCGGCGTGGGCGCGCGCGACCTCGCGGAATGCCTGCGGCTACAGATCCTGGAGCTGCGCAACACGCC
CGAGGCGCGCGCCGCGCTCGCGCTGTGCGGCCAGCCGCTCGAGCTCGTGGCCAAGCGCGACATCCGCAAGCTGTGCAGCG
CCTGCCGGCTCGACGACGAGACCGTGCGCGCCGCGCTCGCGCTGATCGCGCGGCTCGAACCCAAGCCCGGCCGGCGCTTC
GTCGACGTCGAGCGCAACATCGTCGTGCCGGACGTGATCGTCACGCGCGCGGGCCGCGGCTTCAAGGTCATCCTCAACCC
CGACGTGATGCCGCGATTGCGCGTGCACGACGTCTACGCCAACGCCCTGCGGCAGAACCGCGGCGGGCGCGACAGCGGCG
GCGAAGGCGGCCACGCGGCCATGCAGCAGCGGCTGCAGGAAGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCCAGCGCCATCGTCGAACGCCAGCGCAACTTCTTCATGCACGGCGAGCTCGCCATGCGCCCGCT
GGTGCTGCGCGAGATCGCCGACGAGCTCGGCCTGCACGAATCCACCATCAGCCGCGTGACCACCGCGAAGTACATGGCCA
CGCCCTTCGGCACCTACGAGCTCAAGTACTTCTTCGGCTCCTCGCTGGGCACCGAAACCGGCGGCAACGCCTCGAGCACC
GCGGTGCGCGCGCTGCTCAAGCAGTTCATTGCCGCCGAAGAGGCCAGCAAGCCGCTGTCGGACAACCAGCTGTCCGACCT
GCTCAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGGCCATGCGCATCGCCCCCGCGAACC
TGCGCAAATCCCTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(153-359)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8ILY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.926

100

0.511