Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G7098_RS05695 Genome accession   NZ_CP049980
Coordinates   1232966..1233592 (+) Length   208 a.a.
NCBI ID   WP_059308343.1    Uniprot ID   A0A9X3YCJ6
Organism   Leclercia adecarboxylata strain 707804     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227966..1238592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7098_RS05675 (G7098_05675) - 1228360..1230120 (-) 1761 WP_165717620.1 Lon protease family protein -
  G7098_RS05680 (G7098_05680) matP 1230307..1230762 (+) 456 WP_165717621.1 macrodomain Ter protein MatP -
  G7098_RS05685 (G7098_05685) ompA 1230829..1231884 (-) 1056 WP_103792031.1 porin OmpA -
  G7098_RS05690 (G7098_05690) sulA 1232239..1232748 (-) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  G7098_RS05695 (G7098_05695) sxy/tfoX 1232966..1233592 (+) 627 WP_059308343.1 TfoX/Sxy family DNA transformation protein Regulator
  G7098_RS05700 (G7098_05700) yccS 1233577..1235712 (-) 2136 WP_130589068.1 YccS family putative transporter -
  G7098_RS05705 (G7098_05705) - 1235731..1236177 (-) 447 WP_032617407.1 YccF domain-containing protein -
  G7098_RS05710 (G7098_05710) helD 1236301..1238355 (+) 2055 WP_148568914.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23878.43 Da        Isoelectric Point: 9.1279

>NTDB_id=429151 G7098_RS05695 WP_059308343.1 1232966..1233592(+) (sxy/tfoX) [Leclercia adecarboxylata strain 707804]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRAVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPELRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=429151 G7098_RS05695 WP_059308343.1 1232966..1233592(+) (sxy/tfoX) [Leclercia adecarboxylata strain 707804]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTCGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCGGATGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGTGCTCCGTATTGCGCCAAAAATACCACCTCTTACCTGACGCTGATGAAGCGGGGGCGCGCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCTTCACTTGCTCTCGAAGCCGCGCG
GCGGGAACGTCGCGAGCGGTACAAACGCGACAGGCTGAAAGATTTACCCAATCTCAACTTTCAGCTTGAGATTCTGCTGA
ATGAGGCGGGAATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTGAAGATCAGAGCGCTTAAC
AAGCATCTGAGTTACAAAGTGCTGTTTGCGCTGGAGGGGGCAATAGTGGGGCTGCATGAAGCAGCGCTCCCGGAGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTGCCGGTAGAGAATAGTCCTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.561

98.558

0.567