Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HAP53_RS12435 Genome accession   NZ_CP049979
Coordinates   2647063..2647692 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain IBS28     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2642063..2652692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP53_RS12415 (HAP53_12415) ycbZ 2642453..2644213 (-) 1761 WP_000156526.1 Lon protease family protein -
  HAP53_RS12420 (HAP53_12420) matP 2644399..2644851 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HAP53_RS12425 (HAP53_12425) ompA 2644926..2645978 (-) 1053 WP_000750419.1 porin OmpA -
  HAP53_RS12430 (HAP53_12430) sulA 2646335..2646844 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HAP53_RS12435 (HAP53_12435) sxy/tfoX 2647063..2647692 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HAP53_RS12440 (HAP53_12440) yccS 2647655..2649817 (-) 2163 WP_000875044.1 YccS family putative transporter -
  HAP53_RS12445 (HAP53_12445) yccF 2649827..2650273 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HAP53_RS12450 (HAP53_12450) helD 2650396..2652450 (+) 2055 WP_001373324.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=429138 HAP53_RS12435 WP_000839153.1 2647063..2647692(+) (sxy/tfoX) [Escherichia coli strain IBS28]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=429138 HAP53_RS12435 WP_000839153.1 2647063..2647692(+) (sxy/tfoX) [Escherichia coli strain IBS28]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1