Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BHV55_RS12245 Genome accession   NZ_CP049978
Coordinates   2369836..2370114 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus sp. RZ2MS9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364836..2375114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHV55_RS12225 (BHV55_12225) - 2366512..2367321 (+) 810 WP_000678509.1 papain-like cysteine protease family protein -
  BHV55_RS12230 (BHV55_12230) - 2367347..2367949 (+) 603 WP_000517260.1 hypothetical protein -
  BHV55_RS12235 (BHV55_12235) - 2368189..2368440 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  BHV55_RS12240 (BHV55_12240) - 2368817..2369695 (+) 879 WP_000397984.1 helix-turn-helix domain-containing protein -
  BHV55_RS12245 (BHV55_12245) abrB 2369836..2370114 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BHV55_RS12250 (BHV55_12250) - 2370636..2371886 (+) 1251 WP_048568149.1 hypothetical protein -
  BHV55_RS12255 (BHV55_12255) - 2371954..2372712 (+) 759 WP_000347986.1 TSUP family transporter -
  BHV55_RS12260 (BHV55_12260) - 2372966..2373625 (+) 660 WP_000682538.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=429102 BHV55_RS12245 WP_000842216.1 2369836..2370114(+) (abrB) [Bacillus sp. RZ2MS9]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=429102 BHV55_RS12245 WP_000842216.1 2369836..2370114(+) (abrB) [Bacillus sp. RZ2MS9]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATCGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489