Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D7S_RS07010 Genome accession   NC_017846
Coordinates   1421372..1421974 (+) Length   200 a.a.
NCBI ID   WP_005542695.1    Uniprot ID   A0A142G1C2
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1416372..1426974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS06985 (D7S_01508) fecD 1416768..1417631 (-) 864 WP_410374475.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  D7S_RS12530 - 1417582..1417752 (-) 171 WP_410374476.1 hypothetical protein -
  D7S_RS06990 (D7S_01509) fecC 1417752..1418741 (-) 990 WP_005542701.1 iron-dicitrate ABC transporter permease FecC -
  D7S_RS06995 (D7S_01510) - 1418741..1419634 (-) 894 WP_005542699.1 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB -
  D7S_RS07000 (D7S_01511) - 1419703..1420773 (-) 1071 WP_005542697.1 metallophosphoesterase -
  D7S_RS07005 (D7S_03250) - 1420958..1421287 (+) 330 WP_005546714.1 YbaB/EbfC family nucleoid-associated protein -
  D7S_RS07010 (D7S_01513) recR 1421372..1421974 (+) 603 WP_005542695.1 recombination mediator RecR Machinery gene
  D7S_RS07015 (D7S_01514) - 1422006..1423943 (+) 1938 WP_005542694.1 DNA topoisomerase III -
  D7S_RS07020 (D7S_01516) secG 1424104..1424445 (+) 342 WP_005552797.1 preprotein translocase subunit SecG -
  D7S_RS07035 (D7S_01520) mtgA 1425139..1425912 (-) 774 WP_005542681.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  D7S_RS07040 (D7S_01521) trpR 1425890..1426198 (-) 309 WP_005542679.1 trp operon repressor -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21897.08 Da        Isoelectric Point: 6.2212

>NTDB_id=42904 D7S_RS07010 WP_005542695.1 1421372..1421974(+) (recR) [Aggregatibacter actinomycetemcomitans D7S-1]
MQTSPLLENLIESLRVLPGVGPKSAQRMAYHLLQRNRSGGMRLAQGLTEAMSKIGHCEHCRTFTEEDVCNICSNPRRQNS
GLLCVVETPADILAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLQTESFNEVILATNPTVEGDATANYIAEL
CLQQNVKVSRIAHGIPVGGELEMVDGTTLTHSFLGRREIG

Nucleotide


Download         Length: 603 bp        

>NTDB_id=42904 D7S_RS07010 WP_005542695.1 1421372..1421974(+) (recR) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGCAAACCAGCCCCTTGTTAGAAAATCTGATCGAAAGTTTACGCGTATTGCCGGGCGTCGGTCCGAAATCCGCGCAACG
TATGGCGTATCATTTATTGCAACGCAATCGCAGCGGCGGAATGCGCTTGGCGCAAGGGCTGACGGAAGCGATGTCGAAAA
TCGGGCATTGTGAACATTGCCGCACTTTTACGGAAGAAGATGTGTGCAACATTTGTAGTAATCCACGCCGTCAAAATTCG
GGCTTGCTTTGCGTGGTGGAAACGCCGGCGGATATTCTTGCTATTGAGCAAACAGGGCAGTTTTCCGGGCGTTATTTCGT
GCTGATGGGGCATTTGTCGCCGCTGGACGGTATCGGCCCGCGCGAAATCGGCTTGGATTTGTTGCAAAAACGCCTGCAAA
CGGAATCTTTCAATGAAGTGATTTTAGCCACTAACCCGACGGTAGAAGGCGACGCCACAGCAAACTACATTGCGGAACTT
TGCCTACAACAAAACGTCAAAGTCAGCCGTATTGCCCACGGCATTCCGGTGGGTGGCGAATTGGAAATGGTGGACGGCAC
CACGCTGACCCATTCCTTCTTAGGTCGCCGCGAAATCGGCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G1C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435

Multiple sequence alignment