Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G9V97_RS04870 Genome accession   NZ_CP049936
Coordinates   1001818..1002447 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JL05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 996818..1007447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9V97_RS04855 (G9V97_04850) helD 997061..999115 (-) 2055 WP_001315388.1 DNA helicase IV -
  G9V97_RS04860 (G9V97_04855) yccF 999237..999683 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G9V97_RS04865 (G9V97_04860) yccS 999693..1001855 (+) 2163 WP_000875044.1 YccS family putative transporter -
  G9V97_RS04870 (G9V97_04865) sxy/tfoX 1001818..1002447 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G9V97_RS04875 (G9V97_04870) sulA 1002666..1003175 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G9V97_RS04880 (G9V97_04875) ompA 1003532..1004583 (+) 1052 Protein_969 porin OmpA -
  G9V97_RS04885 (G9V97_04880) matP 1004658..1005110 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  G9V97_RS04890 (G9V97_04885) ycbZ 1005296..1007056 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=428794 G9V97_RS04870 WP_000839153.1 1001818..1002447(-) (sxy/tfoX) [Escherichia coli strain JL05]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=428794 G9V97_RS04870 WP_000839153.1 1001818..1002447(-) (sxy/tfoX) [Escherichia coli strain JL05]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1