Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   D7S_RS02835 Genome accession   NC_017846
Coordinates   611206..611949 (-) Length   247 a.a.
NCBI ID   WP_005549806.1    Uniprot ID   A0A5D0EJL7
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606206..616949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS02815 (D7S_00614) rimI 606357..606800 (+) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  D7S_RS02820 (D7S_00615) recC 606802..610191 (-) 3390 WP_005537947.1 exodeoxyribonuclease V subunit gamma -
  D7S_RS02825 (D7S_00616) comQ 610237..610539 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  D7S_RS02830 (D7S_00617) comP 610514..611209 (-) 696 WP_005537951.1 DUF2572 family protein Machinery gene
  D7S_RS02835 (D7S_00618) comO 611206..611949 (-) 744 WP_005549806.1 type II secretion system protein J Machinery gene
  D7S_RS02840 (D7S_00619) comN 611936..612457 (-) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  D7S_RS02860 (D7S_00623) pal 613162..613629 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  D7S_RS02865 (D7S_00624) tolB 613644..614924 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  D7S_RS02870 (D7S_00625) tolA 614959..616107 (-) 1149 WP_005549166.1 cell envelope integrity protein TolA -
  D7S_RS02875 (D7S_00626) tolR 616124..616546 (-) 423 WP_005542289.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28579.58 Da        Isoelectric Point: 7.9878

>NTDB_id=42875 D7S_RS02835 WP_005549806.1 611206..611949(-) (comO) [Aggregatibacter actinomycetemcomitans D7S-1]
MMKNRAFFHVSPYHGQSLVALMISVALSSFLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLHQNMLE
TRLTYKNAVKQNCSQDECRRYTQQSACHHGGWADLLDEKEYEISQLSFDWLSEQKGIEIRLSGRFKHHKQIEYETSMIVP
LLNGAKE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=42875 D7S_RS02835 WP_005549806.1 611206..611949(-) (comO) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGATGAAGAATAGAGCGTTTTTCCACGTGTCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTTTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGTGGTTTTCGTGCCGTAAATAAT
AAATTAAAACAAAATAATATCGCCTTATTCGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGTGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTATTCGGTTATCGACTTCATCAAAATATGCTGGAA
ACGCGTTTGACTTACAAAAATGCGGTGAAGCAAAACTGCTCCCAAGACGAGTGCCGCCGCTATACACAACAATCCGCGTG
TCATCACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTATCGGAAC
AAAAGGGGATTGAAATTCGCCTCAGTGGACGTTTTAAACACCATAAACAGATCGAATATGAAACTTCCATGATCGTGCCT
TTATTGAACGGAGCCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EJL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.442

84.211

0.433

Multiple sequence alignment