Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   G4G26_RS12590 Genome accession   NZ_CP049924
Coordinates   2472034..2472801 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain So1b     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2467034..2477801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS12570 (G4G26_12605) ppsR 2467209..2468021 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  G4G26_RS12575 (G4G26_12610) ccpN 2468047..2468685 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  G4G26_RS12580 (G4G26_12615) glyS 2468818..2470857 (-) 2040 WP_182932154.1 glycine--tRNA ligase subunit beta -
  G4G26_RS12585 (G4G26_12620) glyQ 2470850..2471737 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  G4G26_RS12590 (G4G26_12625) recO 2472034..2472801 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  G4G26_RS12595 (G4G26_12630) yqzL 2472838..2472981 (-) 144 WP_003230053.1 YqzL family protein -
  G4G26_RS12600 (G4G26_12635) era 2473129..2474034 (-) 906 WP_003230051.1 GTPase Era -
  G4G26_RS12605 (G4G26_12640) cdd 2474015..2474425 (-) 411 WP_003230049.1 cytidine deaminase -
  G4G26_RS12610 (G4G26_12645) unpK 2474544..2474915 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  G4G26_RS12615 (G4G26_12650) ybeY 2474896..2475369 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  G4G26_RS12620 (G4G26_12655) pgpH 2475370..2477505 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=428742 G4G26_RS12590 WP_014477369.1 2472034..2472801(-) (recO) [Bacillus subtilis strain So1b]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=428742 G4G26_RS12590 WP_014477369.1 2472034..2472801(-) (recO) [Bacillus subtilis strain So1b]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996