Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   G4G26_RS07670 Genome accession   NZ_CP049924
Coordinates   1475230..1475508 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain So1b     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1470230..1480508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS07650 (G4G26_07685) - 1471418..1472329 (+) 912 WP_015715819.1 ketopantoate reductase family protein -
  G4G26_RS07655 (G4G26_07690) ampS 1472363..1473595 (-) 1233 WP_015715820.1 aminopeptidase -
  G4G26_RS07660 (G4G26_07695) ykpC 1473704..1473838 (-) 135 WP_003238865.1 protein YkpC -
  G4G26_RS07665 (G4G26_07700) mreBH 1473939..1474946 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  G4G26_RS07670 (G4G26_07705) abrB 1475230..1475508 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  G4G26_RS07675 (G4G26_07710) kinC 1475698..1476984 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  G4G26_RS07680 (G4G26_07715) ykqA 1477000..1477827 (+) 828 WP_015715821.1 gamma-glutamylcyclotransferase -
  G4G26_RS07685 (G4G26_07720) ktrC 1477890..1478555 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  G4G26_RS07690 (G4G26_07725) ade 1478711..1480447 (+) 1737 WP_033883808.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=428725 G4G26_RS07670 WP_003244728.1 1475230..1475508(+) (abrB) [Bacillus subtilis strain So1b]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=428725 G4G26_RS07670 WP_003244728.1 1475230..1475508(+) (abrB) [Bacillus subtilis strain So1b]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576