Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   G4G26_RS05505 Genome accession   NZ_CP049924
Coordinates   1074303..1074881 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069303..1079881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS05485 (G4G26_05505) hemAT 1069814..1071112 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  G4G26_RS05490 (G4G26_05510) yhfW 1071251..1072780 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  G4G26_RS05495 (G4G26_05515) yhxC 1072892..1073749 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  G4G26_RS05500 (G4G26_05520) yhzC 1073777..1074010 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  G4G26_RS05505 (G4G26_05525) comK 1074303..1074881 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  G4G26_RS05510 (G4G26_05530) yhxD 1074928..1075827 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  G4G26_RS05515 (G4G26_05535) yhjA 1076044..1076313 (+) 270 WP_182932238.1 excalibur calcium-binding domain-containing protein -
  G4G26_RS05520 (G4G26_05540) yhjB 1076357..1077826 (-) 1470 WP_029726292.1 sodium:solute symporter -
  G4G26_RS05525 (G4G26_05545) yhjC 1077823..1078023 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  G4G26_RS05530 (G4G26_05550) - 1078231..1078593 (-) 363 WP_003233132.1 hypothetical protein -
  G4G26_RS05535 (G4G26_05555) yhjE 1078745..1079368 (+) 624 WP_010886465.1 VTT domain-containing protein -
  G4G26_RS05540 (G4G26_05560) lepB 1079370..1079876 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=428711 G4G26_RS05505 WP_029317573.1 1074303..1074881(+) (comK) [Bacillus subtilis strain So1b]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=428711 G4G26_RS05505 WP_029317573.1 1074303..1074881(+) (comK) [Bacillus subtilis strain So1b]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995