Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   G4G26_RS01980 Genome accession   NZ_CP049924
Coordinates   374991..375440 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain So1b     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 369991..380440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS01945 (G4G26_01955) yckA 370264..370944 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  G4G26_RS01950 (G4G26_01960) yckB 370954..371817 (-) 864 WP_015715225.1 transporter substrate-binding domain-containing protein -
  G4G26_RS01955 (G4G26_01965) - 371979..372174 (+) 196 Protein_342 hypothetical protein -
  G4G26_RS01960 (G4G26_01970) - 372214..372528 (+) 315 Protein_343 RDD family protein -
  G4G26_RS01965 (G4G26_01975) yckD 372610..372942 (+) 333 WP_015252849.1 YckD family protein -
  G4G26_RS01970 (G4G26_01980) bglC 373096..374529 (+) 1434 WP_003234614.1 6-phospho-beta-glucosidase -
  G4G26_RS01975 (G4G26_01985) nin/comJ 374566..374964 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  G4G26_RS01980 (G4G26_01990) nucA/comI 374991..375440 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  G4G26_RS01985 (G4G26_01995) tlpC 375608..377329 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  G4G26_RS01990 (G4G26_02000) hxlB 377440..377997 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  G4G26_RS01995 (G4G26_02005) hxlA 378003..378635 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  G4G26_RS02000 (G4G26_02010) hxlR 378868..379230 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=428701 G4G26_RS01980 WP_003234608.1 374991..375440(-) (nucA/comI) [Bacillus subtilis strain So1b]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=428701 G4G26_RS01980 WP_003234608.1 374991..375440(-) (nucA/comI) [Bacillus subtilis strain So1b]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98