Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   G8D99_RS14255 Genome accession   NZ_CP049916
Coordinates   3122597..3122920 (-) Length   107 a.a.
NCBI ID   WP_166327007.1    Uniprot ID   -
Organism   Acinetobacter lanii strain 185     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3117597..3127920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS14235 (G8D99_14235) - 3117655..3118392 (-) 738 WP_166326999.1 FHA domain-containing protein -
  G8D99_RS14240 (G8D99_14240) gspD 3118460..3120739 (-) 2280 WP_166327001.1 type II secretion system secretin GspD -
  G8D99_RS14245 (G8D99_14245) - 3120781..3121686 (-) 906 WP_166327003.1 type II secretion system protein N -
  G8D99_RS14250 (G8D99_14250) gspN 3121686..3122429 (-) 744 WP_166327005.1 type II secretion system protein N -
  G8D99_RS14255 (G8D99_14255) hns 3122597..3122920 (-) 324 WP_166327007.1 H-NS family nucleoid-associated regulatory protein Regulator
  G8D99_RS14260 (G8D99_14260) - 3123068..3123499 (-) 432 WP_166327009.1 thioesterase family protein -
  G8D99_RS14265 (G8D99_14265) - 3123508..3124701 (-) 1194 WP_166327011.1 heme biosynthesis protein HemY -
  G8D99_RS14270 (G8D99_14270) - 3124706..3125539 (-) 834 WP_166327013.1 hypothetical protein -
  G8D99_RS14275 (G8D99_14275) - 3125536..3126318 (-) 783 WP_166327015.1 uroporphyrinogen-III synthase -
  G8D99_RS14280 (G8D99_14280) hemC 3126340..3127260 (-) 921 WP_196782911.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12348.02 Da        Isoelectric Point: 8.4278

>NTDB_id=428651 G8D99_RS14255 WP_166327007.1 3122597..3122920(-) (hns) [Acinetobacter lanii strain 185]
MPDISNLSVEELRKLTAEAEALIESKKDQAIEDAYNQILKIAESAGLTLEQFIEYGSHKRKKTTRKSVEPRYRNKDNKDE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=428651 G8D99_RS14255 WP_166327007.1 3122597..3122920(-) (hns) [Acinetobacter lanii strain 185]
ATGCCAGACATTAGTAATCTGTCGGTTGAAGAGTTAAGAAAGTTAACCGCTGAAGCGGAAGCTTTAATTGAATCTAAAAA
AGACCAAGCGATTGAAGATGCTTATAATCAAATTCTTAAAATTGCTGAATCTGCGGGTTTAACTTTAGAGCAATTTATTG
AATACGGTTCGCATAAACGTAAAAAAACCACCCGTAAATCGGTTGAACCTCGCTATCGTAACAAAGATAATAAAGATGAG
ACTTGGACGGGTCGTGGTAAACAACCGCGTTGGTTGGTGGCTCAGCTTGAAAAAGGCGCAAAATTAGAAGATTTCTTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.302

99.065

0.776