Detailed information NTG0428591

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G7083_RS03800
• Genome accession: NZ_CP049913
• Coordinates: 815631..816638 (-)
• Length: 335 a.a.
• NCBI ID: WP_166013656.1
• Uniprot ID: -
• Organism: Vibrio sp. HDW18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 810631..821638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G7083_RS03785 (G7083_03785)	cysP	810705..811706 (-)	1002	WP_166013653.1	thiosulfate ABC transporter substrate-binding protein CysP	-
G7083_RS03790 (G7083_03790)	cysM	811911..812801 (+)	891	WP_166013654.1	cysteine synthase CysM	-
G7083_RS03795 (G7083_03795)	mutS	812953..815538 (+)	2586	WP_166013655.1	DNA mismatch repair protein MutS	-
G7083_RS03800 (G7083_03800)	rpoS	815631..816638 (-)	1008	WP_166013656.1	RNA polymerase sigma factor RpoS	Regulator
G7083_RS03805 (G7083_03805)	nlpD	816711..817649 (-)	939	WP_166013657.1	murein hydrolase activator NlpD	-
G7083_RS03810 (G7083_03810)	-	817649..818275 (-)	627	WP_166013658.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
G7083_RS03815 (G7083_03815)	surE	818268..819020 (-)	753	WP_166013659.1	5'/3'-nucleotidase SurE	-
G7083_RS03820 (G7083_03820)	truD	819022..820107 (-)	1086	WP_166013660.1	tRNA pseudouridine(13) synthase TruD	-
G7083_RS03825 (G7083_03825)	ispF	820167..820643 (-)	477	WP_166013661.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G7083_RS03830 (G7083_03830)	ispD	820640..821338 (-)	699	WP_166013662.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
G7083_RS03835 (G7083_03835)	ftsB	821335..821619 (-)	285	WP_166013663.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38558.24 Da
• Isoelectric Point: 4.3516

>NTDB_id=428591 G7083_RS03800 WP_166013656.1 815631..816638(-) (rpoS) [Vibrio sp. HDW18]
MSVSNTVTKIEEFDFEDEALEELTTDDELTNDEASTTAESSSEDVREEFDASTKNLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARNRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEDIALELNKPVDDVTKMLRLNERISSVDIPIGGDGDKALLDILP
DSHTADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNAEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=428591 G7083_RS03800 WP_166013656.1 815631..816638(-) (rpoS) [Vibrio sp. HDW18]
ATGAGTGTCAGTAATACTGTAACCAAAATAGAAGAGTTTGATTTTGAAGATGAAGCTCTGGAAGAGCTCACAACCGATGA
TGAACTCACCAATGATGAAGCATCTACCACTGCGGAAAGCTCCAGTGAGGATGTTCGTGAAGAATTTGATGCATCAACCA
AAAACCTTGATGCAACACAAATGTACCTCAGCGAGATTGGTTTTTCACCACTGCTGACTGCCGAAGAAGAAGTACTGTAT
GCTCGTCGTGCATTACGTGGCGATGAAGCAGCACGTAACCGCATGATTGAAAGTAACTTGCGCTTAGTGGTGAAAATTTC
CCGTCGTTACAGTAACCGCGGACTCGCGCTGCTCGATCTGATTGAAGAGGGAAATCTTGGCTTGATTCGTGCGGTTGAAA
AATTTGACCCTGAACGTGGTTTTCGCTTTTCAACCTATGCGACTTGGTGGATCCGTCAGACTATCGAACGAGCGTTAATG
AACCAGACTCGCACCATTCGTCTGCCGATCCATGTGGTTAAAGAGTTGAACATTTACCTACGTACGGCTCGTGAGTTATC
GCAGCGCCTTGACCACGAACCTACGCCAGAAGATATTGCTCTCGAACTTAATAAGCCGGTCGATGATGTGACGAAAATGT
TGCGTCTTAATGAGCGTATCAGCTCGGTGGATATCCCGATTGGTGGCGATGGTGACAAAGCTTTACTGGATATTTTGCCT
GATTCGCATACCGCAGATCCGGAATTTTCCACACAAGATGATGATATTCGTGAATCATTGCTCAATTGGCTTGATGAGTT
AAATCCAAAGCAAAAAGAGGTGTTAGCACGCCGCTTTGGTCTGCTTGGCTATGAGCCATCGACCTTGGAAGAGGTGGGAC
GTGAGATCAACCTAACCCGTGAGCGGGTGCGTCAAATCCAAGTGGAAGGTTTACGTCGTCTGCGGGAGATTTTGGTCAAA
CAAGGTCTGAATATGGAAGCGCTGTTTAATGCCGAATATGACAACTAG

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-248)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	93.731	100	0.937