Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G7083_RS03660 Genome accession   NZ_CP049913
Coordinates   789362..789880 (-) Length   172 a.a.
NCBI ID   WP_166013638.1    Uniprot ID   A0A6G8D384
Organism   Vibrio sp. HDW18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 784362..794880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS03640 (G7083_03640) rpsP 784923..785171 (-) 249 WP_166013634.1 30S ribosomal protein S16 -
  G7083_RS03645 (G7083_03645) ffh 785408..786790 (-) 1383 WP_166013635.1 signal recognition particle protein -
  G7083_RS03650 (G7083_03650) - 787126..787920 (+) 795 WP_166013636.1 inner membrane protein YpjD -
  G7083_RS03655 (G7083_03655) - 788003..789280 (+) 1278 WP_166013637.1 HlyC/CorC family transporter -
  G7083_RS03660 (G7083_03660) luxS 789362..789880 (-) 519 WP_166013638.1 S-ribosylhomocysteine lyase Regulator
  G7083_RS03665 (G7083_03665) gshA 789932..791506 (-) 1575 WP_166013639.1 glutamate--cysteine ligase -
  G7083_RS03670 (G7083_03670) - 791617..794472 (-) 2856 WP_166014980.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19008.83 Da        Isoelectric Point: 6.1282

>NTDB_id=428588 G7083_RS03660 WP_166013638.1 789362..789880(-) (luxS) [Vibrio sp. HDW18]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNQDILSERGIHTLEHLYAGFMRQHLNGREVEIIDISP
MGCRTGFYMSLIGAPSEQQVATAWLASMQDVLKVASQAHIPELNRYQCGTAAMHSLAEAQAIAQQVITAGIAVNRNEELA
LPEAMLHQLNVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=428588 G7083_RS03660 WP_166013638.1 789362..789880(-) (luxS) [Vibrio sp. HDW18]
ATGCCATTATTAGACAGTTTCACGGTTGATCATACTCGTATGCAGGCACCTGCGGTACGGGTGGCTAAAACGATGCAAAC
CCCAAAAGGGGATACTATTACGGTGTTTGATCTGCGGTTTACCTTGCCCAATCAGGACATTTTGTCTGAGCGGGGTATTC
ATACTTTAGAGCACTTGTATGCCGGATTTATGCGTCAGCATTTAAATGGCCGCGAGGTGGAAATCATCGATATTTCGCCT
ATGGGCTGTCGTACCGGTTTTTATATGAGCTTGATTGGTGCGCCTAGCGAGCAGCAAGTGGCGACGGCTTGGTTAGCGTC
GATGCAAGATGTGCTGAAAGTCGCAAGCCAAGCGCATATCCCTGAGTTAAATCGATACCAATGTGGCACGGCAGCAATGC
ACTCACTGGCAGAAGCACAAGCGATTGCCCAGCAAGTGATTACCGCTGGTATTGCCGTGAACCGTAATGAAGAGTTGGCA
CTACCGGAAGCGATGCTTCATCAGCTAAACGTTAACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D384

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.465

100

0.855