Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G7083_RS00840 Genome accession   NZ_CP049913
Coordinates   196222..197646 (+) Length   474 a.a.
NCBI ID   WP_166014961.1    Uniprot ID   -
Organism   Vibrio sp. HDW18     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 191222..202646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7083_RS00815 (G7083_00815) - 191308..191916 (-) 609 WP_166013133.1 histidine phosphatase family protein -
  G7083_RS00820 (G7083_00820) cobU 191924..192463 (-) 540 WP_166013134.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  G7083_RS00825 (G7083_00825) - 192472..193257 (-) 786 WP_166013135.1 adenosylcobinamide-GDP ribazoletransferase -
  G7083_RS00830 (G7083_00830) cobT 193257..194282 (-) 1026 WP_166013136.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  G7083_RS00835 (G7083_00835) - 194708..196078 (+) 1371 WP_166013137.1 L-cystine transporter -
  G7083_RS00840 (G7083_00840) sbcB 196222..197646 (+) 1425 WP_166014961.1 exodeoxyribonuclease I Machinery gene
  G7083_RS00845 (G7083_00845) - 197681..198055 (+) 375 WP_166013138.1 CidA/LrgA family protein -
  G7083_RS00850 (G7083_00850) - 198046..198720 (+) 675 WP_166013139.1 CidB/LrgB family autolysis modulator -
  G7083_RS00855 (G7083_00855) cdd 198955..199842 (+) 888 WP_166013140.1 cytidine deaminase -
  G7083_RS00860 (G7083_00860) purT 200044..201219 (+) 1176 WP_166013141.1 phosphoribosylglycinamide formyltransferase 2 -
  G7083_RS00865 (G7083_00865) - 201606..202385 (+) 780 WP_166013142.1 phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54805.08 Da        Isoelectric Point: 5.8739

>NTDB_id=428582 G7083_RS00840 WP_166014961.1 196222..197646(+) (sbcB) [Vibrio sp. HDW18]
MQQEHQPTFFFLDYETWGVNPAQDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPGPEAALITGITPQTANQQGLPEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVMRACHALRPDGIVWPENEQGFT
SFKLEHLSVANGIEHSNAHDAMADVLATIELAKKIKAAQPKLFEYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVVVVDLAKDPQPLFDLDAETLHDRLYTRYEDLAADEQPVPVKLVHLNKCPILAPAKTLTAENAE
QIGIDRAQCLAHLQLIRQHPEIREKLVNVFNQSREFSQAQDVDSQLYDGFFSPADRAAMDIIRTTDPDHLASLAIRVADK
RIEPLLFRYRARHYPQTLNDSEQRRWAAHCRDYFERHLESYMLNLENLVLEHQADQKKMAILKSVYHYVERLAY

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=428582 G7083_RS00840 WP_166014961.1 196222..197646(+) (sbcB) [Vibrio sp. HDW18]
ATGCAGCAAGAACACCAACCCACTTTTTTCTTCCTCGATTATGAGACTTGGGGAGTCAATCCCGCGCAAGATCGTCCTAG
TCAGTTTGCCGGTGTTCGAACCGATATGGATTTCAACATTATTGGCGAGCCGCTGGTAATTTACTGTCAATTGCCGAATG
ATTATTTACCAGGCCCAGAAGCGGCGCTGATCACCGGCATTACCCCGCAAACCGCCAACCAGCAAGGTTTGCCTGAACCG
GAGTTTATTGCAAGGATCCACGCGGAGCTCTCCACCCCAAATACCATTAGCCTCGGCTATAACAGCATCCGTTTTGATGA
TGAAGTGACTCGCTATACTTGCTATCGCAACTTTATTGACCCTTATGCCTGGAGCTGGCAACACGGCAATTCACGCTGGG
ATCTGCTCGATGTGATGCGCGCTTGTCACGCGCTGCGCCCAGATGGGATCGTCTGGCCAGAAAATGAGCAAGGCTTTACC
AGCTTTAAGCTGGAGCACCTTTCAGTGGCCAATGGCATTGAACACAGTAATGCGCACGATGCAATGGCCGATGTGCTGGC
CACCATTGAGTTGGCTAAAAAAATTAAAGCGGCCCAGCCGAAGCTATTTGAGTATTTTTTCACCATGCGCCACAAGCGCA
AACTGACCGAATTGATTGATATTGTTAATCAAACCCCGCTGATGCATGTTTCCGGCATGCTGGGGCGTGAGCGCCAATAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCCACCAACCAAAATGCAGTAGTTGTGGTCGATTTGGCCAAAGATCCTCA
GCCGCTCTTCGATCTGGATGCAGAAACCTTGCACGATCGTCTTTATACTCGTTATGAAGATTTAGCCGCCGATGAACAGC
CAGTGCCGGTGAAACTGGTGCATCTTAATAAGTGCCCAATCCTCGCGCCGGCCAAAACCCTAACCGCAGAGAATGCCGAG
CAGATCGGTATTGATCGCGCCCAATGTCTGGCCCATTTGCAGTTGATCCGTCAGCATCCTGAAATTCGTGAGAAATTGGT
CAACGTATTTAATCAATCACGGGAGTTTAGCCAAGCACAAGATGTGGATAGCCAACTGTACGATGGATTCTTCTCACCCG
CCGATCGCGCCGCAATGGATATCATCCGCACCACCGACCCCGACCATCTCGCTAGTTTAGCGATTCGCGTGGCCGATAAA
CGCATCGAACCCCTGCTATTTCGCTATCGCGCACGCCATTATCCACAAACGTTAAATGATAGCGAACAACGTCGCTGGGC
AGCACATTGCCGCGACTATTTTGAACGCCATCTTGAGAGTTATATGCTTAATTTGGAAAACTTAGTTCTTGAACATCAAG
CTGACCAAAAGAAAATGGCAATTCTAAAATCGGTTTACCATTACGTTGAACGACTGGCTTATTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

89.641

99.789

0.895