Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G7047_RS28830 Genome accession   NZ_CP049910
Coordinates   6352963..6354120 (-) Length   385 a.a.
NCBI ID   WP_166311705.1    Uniprot ID   -
Organism   Diaphorobacter sp. HDW4A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6347963..6359120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7047_RS28815 (G7047_28825) - 6349002..6350489 (-) 1488 WP_166311703.1 cytochrome c -
  G7047_RS28820 (G7047_28830) - 6350627..6352147 (-) 1521 WP_240939305.1 GMC family oxidoreductase -
  G7047_RS28825 (G7047_28835) - 6352185..6352760 (-) 576 WP_166311704.1 sugar dehydrogenase complex small subunit -
  G7047_RS28830 (G7047_28840) pilA 6352963..6354120 (-) 1158 WP_166311705.1 signal recognition particle-docking protein FtsY Machinery gene
  G7047_RS28835 (G7047_28845) - 6354150..6355616 (+) 1467 WP_166311706.1 pitrilysin family protein -
  G7047_RS28840 (G7047_28850) - 6355694..6357034 (+) 1341 WP_166312318.1 pitrilysin family protein -
  G7047_RS28845 (G7047_28855) rsmD 6357031..6357666 (+) 636 WP_166311707.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 40520.03 Da        Isoelectric Point: 5.9989

>NTDB_id=428581 G7047_RS28830 WP_166311705.1 6352963..6354120(-) (pilA) [Diaphorobacter sp. HDW4A]
MFSFFKKKSSDPAETPVPSASAPAPAPETTDKPVAASGAKSWLRNPFASKDTPPATDNQPPSSGNLGNPPTVQEPQAKPE
ATTDSGDRQGWMDRLKTGLRKTGNSISTIFTGTKIDDALYEELEDALLMADTGVKATQHLLADLKQRVKDTKTTNPAAVK
ALLADALTDLLKPLEKPLAIGTHTPTVIMVAGVNGAGKTTSIGKLTKHLADHGESVLLAAADTFRAAAREQLGVWATRNT
VEIVSQDGGDPAAVSFDAVSAGRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADASAPHEVLLVIDGNTGQNALN
QVKAFDDALQLTGLIVTKLDGTAKGGVLAAIAQEKPIPVYFIGVGEKVEDLETFDAREFAQALLA

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=428581 G7047_RS28830 WP_166311705.1 6352963..6354120(-) (pilA) [Diaphorobacter sp. HDW4A]
ATGTTCAGTTTCTTCAAGAAAAAATCTTCAGACCCCGCTGAAACGCCCGTCCCGAGCGCTTCAGCGCCCGCTCCTGCCCC
CGAAACCACCGACAAACCGGTGGCCGCTTCAGGCGCCAAGAGCTGGCTGCGCAATCCGTTTGCCAGCAAGGATACCCCCC
CGGCAACGGATAACCAGCCGCCATCATCGGGCAATTTGGGCAACCCACCCACAGTCCAGGAACCCCAGGCCAAGCCCGAG
GCGACGACTGACTCCGGCGACCGCCAAGGCTGGATGGACCGCCTCAAGACGGGCCTGCGCAAAACCGGCAACAGCATCTC
GACGATTTTCACCGGAACGAAGATCGACGATGCGCTCTACGAAGAGCTCGAAGACGCCCTGCTCATGGCCGACACCGGCG
TGAAGGCCACGCAGCATCTGCTGGCCGATCTCAAGCAGCGCGTGAAGGACACCAAGACCACCAACCCCGCCGCCGTGAAG
GCGCTGCTGGCCGACGCGCTGACCGACCTGCTCAAGCCGCTCGAGAAGCCGCTCGCCATCGGCACGCACACACCCACCGT
GATCATGGTCGCGGGCGTGAATGGCGCGGGCAAGACAACGTCGATCGGCAAGCTCACCAAGCACCTAGCCGATCACGGTG
AAAGCGTGCTGCTGGCTGCCGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGCTTGGCGTCTGGGCCACCCGCAACACG
GTCGAGATCGTCAGCCAGGACGGCGGCGACCCGGCTGCCGTGAGCTTCGATGCGGTGAGCGCCGGCCGCGCACGCGGCAA
GGACGTGGTGCTGGTCGACACCGCTGGCCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATCAAGCGCG
TGGTCACCAAGGCCGACGCGAGCGCCCCGCACGAAGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTCAAC
CAGGTCAAGGCATTCGACGACGCACTGCAGCTCACCGGCCTCATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGT
GCTGGCCGCCATCGCGCAGGAAAAGCCGATTCCGGTCTACTTCATCGGCGTGGGCGAAAAGGTCGAAGACCTCGAGACCT
TTGACGCACGCGAGTTTGCGCAGGCGCTATTGGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(104-167)

SRP54-type protein, GTPase domain (SRP54)

(185-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.086

100

0.522