Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G7047_RS25040 Genome accession   NZ_CP049910
Coordinates   5474574..5475962 (+) Length   462 a.a.
NCBI ID   WP_166311079.1    Uniprot ID   A0A6G8CVI8
Organism   Diaphorobacter sp. HDW4A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5469574..5480962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7047_RS25020 (G7047_25025) - 5470152..5470934 (-) 783 WP_166311076.1 VOC family protein -
  G7047_RS25025 (G7047_25030) - 5470948..5471943 (-) 996 WP_166311077.1 tripartite tricarboxylate transporter substrate binding protein -
  G7047_RS25030 (G7047_25035) - 5472015..5473718 (-) 1704 WP_166311078.1 thiamine pyrophosphate-binding protein -
  G7047_RS25035 (G7047_25040) - 5473772..5474509 (+) 738 WP_371813825.1 GntR family transcriptional regulator -
  G7047_RS25040 (G7047_25045) radA 5474574..5475962 (+) 1389 WP_166311079.1 DNA repair protein RadA Machinery gene
  G7047_RS25045 (G7047_25050) - 5476096..5476920 (+) 825 WP_166311080.1 class I SAM-dependent methyltransferase -
  G7047_RS25050 (G7047_25055) - 5476995..5477441 (+) 447 WP_166311081.1 glycerate kinase -
  G7047_RS25055 (G7047_25060) - 5477484..5478422 (+) 939 WP_166311082.1 branched-chain amino acid transaminase -
  G7047_RS25060 (G7047_25065) - 5478428..5478634 (+) 207 WP_166311083.1 zinc-finger domain-containing protein -
  G7047_RS25065 (G7047_25070) - 5478823..5480118 (+) 1296 WP_240939257.1 O-antigen ligase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48180.55 Da        Isoelectric Point: 6.9986

>NTDB_id=428577 G7047_RS25040 WP_166311079.1 5474574..5475962(+) (radA) [Diaphorobacter sp. HDW4A]
MAKDKAIFTCTECGGTSPRWLGKCPACGAWNTLVETVVEGGNAGASKNRMSAGSYAGLAQAQAVTPLAAIEAQDVARSPS
GIEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRTGMPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQ
LEKILATMEATQPAVVVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKSTGIAVILVGHVTKEGALAGPRVLEHMVD
TVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALV
DSSGPAPRRLSVGLDRDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPKGFIAFGE
VGLAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKRPIEGLEIHAVERVDEAMSIVRGLG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=428577 G7047_RS25040 WP_166311079.1 5474574..5475962(+) (radA) [Diaphorobacter sp. HDW4A]
ATGGCCAAAGACAAGGCAATCTTCACCTGTACCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGGCGTG
CGGCGCATGGAACACGCTGGTGGAGACGGTGGTCGAGGGCGGCAACGCGGGCGCAAGCAAGAACCGCATGAGCGCCGGGA
GCTATGCCGGCCTTGCGCAGGCCCAGGCCGTCACGCCGCTGGCCGCCATTGAAGCGCAGGATGTGGCGCGCAGCCCGAGC
GGCATCGAGGAGCTGGATCGCGTGCTCGGAGGCGGCATCGTCGAAGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCAT
CGGCAAATCGACGCTGCTGCTGCAGGCCATGGACGCGCTGCACCGCACTGGCATGCCCACGCTCTACGTGACCGGCGAGG
AAAGTGGCGCGCAGGTGGCGCTGCGCTCGCGGCGTTTGGGGTTGGACCACAGCCAGGTGAATGTGCTGGCCGAAATCCAG
CTCGAAAAAATCCTCGCGACCATGGAGGCCACGCAGCCTGCCGTGGTGGTGATCGACTCGATACAGACGGTGTATTCCGA
CCAGCTCACCAGCGCGCCCGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCTCACCTCACGCGCGCGGCCAAGTCCACCG
GCATCGCGGTGATCCTCGTCGGCCACGTCACCAAGGAAGGCGCATTGGCAGGCCCGCGCGTGCTCGAACACATGGTGGAC
ACCGTGCTCTATTTCGAGGGCGACACGCATTCGAGCTTCCGCCTCGTCCGTGCGATCAAGAACCGCTTTGGTGCAGTCAA
CGAAATCGGCGTCTTCGCGATGACTGAAAAGGGCCTGAAGGGCGTGACCAACCCGAGCGCGATCTTTCTCTCGCAGCACA
GCGAACCCGTGCCCGGCAGCTGCGTGCTCGTGACGCTGGAAGGCACGCGCCCGCTGCTGGTTGAAATCCAGGCGCTCGTC
GATTCCTCAGGCCCCGCACCGCGCCGCCTGTCTGTGGGCCTCGACCGTGACCGCCTCGCCATGCTGCTGGCCGTGCTGCA
CCGCCACGCAGGCGTGGCCTGCGCCGATCAGGACGTGTTTGTCAACGCGGTCGGCGGCGTGCGCATCAGCGAGCCCGCAG
CCGATCTGGCCGTGATGTTGTCCATCACCAGCAGCCTGCGGGGCAAGGCCCTGCCCAAGGGCTTCATCGCGTTCGGTGAA
GTGGGTCTGGCAGGCGAGGTGCGCCCCGCGCCGCGCGGTCAGGAACGCCTGAAGGAAGCCGCGAAGCTCGGCTTCACCGT
AGCGGTAGTGCCCAAGGCCAACGCGCCGAAGAGGCCCATCGAGGGGCTTGAAATCCACGCGGTGGAGCGGGTGGATGAGG
CGATGAGTATTGTGCGGGGGCTGGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8CVI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.563

99.134

0.491
  radA Streptococcus mitis NCTC 12261

46.389

98.918

0.459
  radA Streptococcus pneumoniae D39

48.387

93.939

0.455
  radA Streptococcus pneumoniae TIGR4

48.387

93.939

0.455
  radA Streptococcus mitis SK321

48.387

93.939

0.455
  radA Streptococcus pneumoniae R6

48.387

93.939

0.455
  radA Streptococcus pneumoniae Rx1

48.387

93.939

0.455