NTDB

Overview

Name	rpoN/rpoN1	Type	Machinery gene
Locus tag	G7047_RS20980	Genome accession	NZ_CP049910
Coordinates	4572725..4574320 (-)	Length	531 a.a.
NCBI ID	WP_166309743.1	Uniprot ID	A0A6G8CUR9
Organism	Diaphorobacter sp. HDW4A
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4567725..4579320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G7047_RS20970 (G7047_20975)	-	4568296..4572078 (-)	3783	WP_166309739.1	M36 family metallopeptidase	-
G7047_RS20975 (G7047_20980)	-	4572263..4572703 (-)	441	WP_166309741.1	thioesterase family protein	-
G7047_RS20980 (G7047_20985)	rpoN/rpoN1	4572725..4574320 (-)	1596	WP_166309743.1	RNA polymerase factor sigma-54	Machinery gene
G7047_RS20985 (G7047_20990)	lptB	4574383..4575156 (-)	774	WP_166312190.1	LPS export ABC transporter ATP-binding protein	-
G7047_RS20990 (G7047_20995)	lptA	4575198..4575860 (-)	663	WP_166309746.1	lipopolysaccharide transport periplasmic protein LptA	-
G7047_RS20995 (G7047_21000)	-	4576217..4576867 (-)	651	WP_166309748.1	thiol:disulfide interchange protein DsbA/DsbL	-
G7047_RS21000 (G7047_21005)	-	4576935..4577651 (-)	717	WP_166309750.1	SPOR domain-containing protein	-

Sequence

Protein

Download Length: 531 a.a. Molecular weight: 58098.07 Da Isoelectric Point: 4.5284

                                >NTDB_id=428574 G7047_RS20980 WP_166309743.1 4572725..4574320(-) (rpoN/rpoN1) [Diaphorobacter sp. HDW4A]

MKPGLSLRVSQHLALTPQLQQSIKLLQLSTLELEQEVEQMLDDNPFLERTNDEAPREEFGLERENQPVSEDASDADSALY

SAPAPSSTSTSTDDNTASESDAPSAGSEVSEQVDWEGDGTVEMAPDDGEWGGDAPARNNTSSSGDEEVDAIDLAGSHESL

TDHLHRQALALHLSDIDSAAVRFLIESLNDDGYLEESLAELAIALAGADAPTEELEELVHRFTVALRLLQSLDPAGAGAR

NLGECLSLQLHAMNLDEEGDPAVIEVALRVCRDALDLLARKDVKRITQTCAASEELTRAAMNLITRLEPRPGRRFADVQR

QIIVPDVIVKNVGRGAQMRFTVQLNADVMPRLRVHDVYANALRGQRGNEANAGLQQRLQEARWFIKNVQQRFDTILRVST

AIVERQKNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMSTPQGTFELKYFFGSGLGTETGGSASSTAVKALIK

QLLSSENTKKPLSDSKIADMLAEQGIECARRTVAKYREALKIPPANLRKAV

Nucleotide

Download Length: 1596 bp

                                >NTDB_id=428574 G7047_RS20980 WP_166309743.1 4572725..4574320(-) (rpoN/rpoN1) [Diaphorobacter sp. HDW4A]

ATGAAGCCGGGACTGTCGCTTCGGGTCTCGCAGCATCTGGCGCTTACGCCACAACTGCAGCAGTCGATCAAGCTGCTGCA

GCTCTCCACACTGGAGTTGGAACAGGAAGTCGAGCAGATGCTCGACGACAATCCATTTCTGGAACGTACCAACGACGAAG

CTCCACGCGAGGAGTTTGGCCTCGAGCGTGAAAACCAACCCGTCAGTGAAGATGCCAGCGATGCGGACAGCGCGCTGTAC

TCGGCGCCCGCCCCAAGCAGCACTTCGACAAGCACCGATGACAACACGGCGTCGGAGTCCGACGCGCCCTCTGCGGGCTC

CGAAGTGTCCGAGCAGGTGGACTGGGAAGGTGACGGCACCGTCGAGATGGCTCCCGACGATGGCGAATGGGGCGGCGACG

CGCCCGCGCGCAACAACACCAGCAGCTCAGGCGACGAGGAGGTCGACGCCATCGATCTCGCTGGTTCGCACGAATCGCTG

ACCGACCACCTGCACCGTCAGGCGCTGGCCTTGCATCTCTCGGATATCGACAGCGCGGCCGTGCGTTTTCTCATCGAATC

GCTCAACGACGACGGTTATCTCGAAGAATCGCTGGCTGAACTGGCCATCGCGCTTGCAGGGGCAGATGCGCCGACCGAAG

AGCTCGAGGAGCTCGTGCACCGCTTCACCGTGGCGCTGCGGCTTCTGCAGAGCCTCGATCCCGCGGGGGCCGGTGCACGC

AATTTGGGTGAATGCCTTTCGCTGCAGCTGCACGCCATGAACCTCGATGAAGAGGGCGATCCGGCGGTGATCGAAGTCGC

CTTGCGCGTGTGCCGTGACGCGCTTGATCTGCTGGCGCGCAAGGATGTCAAGCGCATCACGCAGACCTGCGCGGCATCGG

AGGAACTCACGCGCGCGGCGATGAATCTGATCACGCGACTCGAGCCCCGTCCCGGTCGCCGCTTTGCCGATGTGCAGCGC

CAGATCATCGTGCCCGATGTGATCGTCAAGAACGTCGGTCGCGGCGCGCAGATGCGATTCACCGTGCAGCTCAATGCGGA

CGTGATGCCGCGCTTGCGCGTGCATGACGTCTATGCCAACGCACTGCGCGGCCAGCGTGGCAACGAGGCCAATGCCGGGC

TGCAGCAGCGCTTGCAGGAAGCGCGCTGGTTCATCAAAAATGTGCAGCAGCGCTTTGACACCATTCTGCGCGTGTCCACC

GCCATCGTCGAGCGCCAGAAGAATTTCTTCGTCCACGGCGAGCTCGCCATGCGCCCGCTGGTGCTGCGCGACATTGCGGA

CGAACTGGGCCTGCACGAATCGACCATCAGCCGCGTGACGACGGCCAAGTACATGTCCACACCGCAGGGCACGTTCGAAC

TCAAGTATTTCTTTGGCTCGGGCCTCGGCACCGAGACCGGCGGCAGTGCGTCGAGCACGGCGGTGAAGGCGCTGATCAAG

CAGCTGCTCAGCTCCGAGAACACGAAGAAGCCGCTGTCCGACAGCAAGATCGCCGACATGCTCGCCGAGCAGGGCATCGA

ATGCGCGCGCCGCACCGTCGCCAAATACCGAGAAGCACTGAAGATTCCGCCTGCCAATCTGCGCAAGGCGGTCTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(374-529)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(154-358)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6G8CUR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	51.036	100	0.51

Detailed information NTG0428574