Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   G7048_RS16030 Genome accession   NZ_CP049905
Coordinates   3496241..3497398 (-) Length   385 a.a.
NCBI ID   WP_166069099.1    Uniprot ID   -
Organism   Diaphorobacter sp. HDW4B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491241..3502398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7048_RS16015 (G7048_16010) - 3492203..3493657 (-) 1455 WP_240933000.1 c-type cytochrome -
  G7048_RS16020 (G7048_16015) - 3493747..3495399 (-) 1653 WP_166069097.1 GMC family oxidoreductase -
  G7048_RS16025 (G7048_16020) - 3495469..3496044 (-) 576 WP_166069098.1 sugar dehydrogenase complex small subunit -
  G7048_RS16030 (G7048_16025) pilA 3496241..3497398 (-) 1158 WP_166069099.1 signal recognition particle-docking protein FtsY Machinery gene
  G7048_RS16035 (G7048_16030) - 3497428..3498894 (+) 1467 WP_166069100.1 pitrilysin family protein -
  G7048_RS16040 (G7048_16035) - 3498931..3500295 (+) 1365 WP_371747704.1 M16 family metallopeptidase -
  G7048_RS16045 (G7048_16040) rsmD 3500310..3500927 (+) 618 WP_166069102.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 40640.22 Da        Isoelectric Point: 6.2642

>NTDB_id=428553 G7048_RS16030 WP_166069099.1 3496241..3497398(-) (pilA) [Diaphorobacter sp. HDW4B]
MFSFFKKKSSDTPETPAPSASAPAPAPETTEKPAATSGTKSWLRNPFASKDTSQPADNLTPSSGNSDLLPTVQEPQAKPE
APTAAGDRKGWMDRLKAGLRKTGNSISTIFTGTKIDDALYEELEDALLMADTGVKATQHLLADLKQRVKDTKTTDPAAVK
SLLADALTELLKPLEKPLVVGEHTPTVIMVAGVNGAGKTTSIGKLTKHLADHGQSVLLAAADTFRAAAREQLGVWATRNT
VEIISQDGGDPAAVSFDAVSAGRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADASAPHEVLLVIDGNTGQNALN
QVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQEKPIPVYFIGVGEKVEDLETFNAREFAQALLA

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=428553 G7048_RS16030 WP_166069099.1 3496241..3497398(-) (pilA) [Diaphorobacter sp. HDW4B]
ATGTTCAGTTTCTTCAAGAAAAAATCTTCCGACACGCCCGAAACGCCCGCCCCGAGCGCTTCAGCACCCGCTCCTGCGCC
CGAAACCACCGAAAAACCGGCGGCCACTTCGGGCACCAAGAGCTGGTTGCGCAATCCGTTTGCCAGCAAGGATACGTCCC
AGCCTGCGGATAACCTGACACCATCATCGGGCAATTCGGACCTGCTGCCCACCGTCCAGGAACCCCAGGCCAAGCCCGAA
GCGCCCACCGCAGCCGGTGACCGCAAAGGCTGGATGGACCGCCTCAAGGCCGGTCTGCGCAAGACCGGCAACAGCATTTC
CACGATTTTCACCGGAACGAAGATCGACGACGCGCTCTACGAAGAGCTCGAAGACGCCCTGCTCATGGCCGACACCGGCG
TGAAGGCCACGCAGCATCTGCTGGCCGACCTCAAGCAGCGCGTGAAGGACACCAAGACCACCGACCCCGCAGCCGTCAAA
TCGCTGCTGGCCGACGCACTGACCGAGCTGCTCAAGCCGCTCGAAAAGCCGCTGGTCGTGGGCGAGCACACGCCCACCGT
CATCATGGTGGCGGGCGTCAATGGCGCGGGCAAGACCACGTCGATCGGCAAGCTCACCAAGCATCTGGCCGACCACGGCC
AAAGCGTGCTGCTGGCCGCAGCCGACACCTTCCGCGCCGCCGCGCGCGAGCAGTTGGGCGTCTGGGCCACACGCAACACA
GTCGAGATCATCAGCCAGGACGGCGGCGATCCCGCTGCCGTGAGCTTTGACGCGGTGAGCGCAGGCCGCGCGCGCGGCAA
GGATGTAGTGCTCGTCGACACCGCCGGTCGCCTGCCCACGCAGCTGCATCTGATGGAAGAGCTCAAGAAGATCAAGCGCG
TGGTCACCAAGGCCGACGCGAGCGCGCCGCACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTCAAC
CAGGTCCGGGCGTTCGACGATGCCCTGCAGCTCACCGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGT
GCTGGCCGCCATCGCGCAGGAAAAGCCGATTCCGGTGTACTTCATCGGCGTGGGCGAAAAGGTCGAAGACCTCGAAACCT
TCAACGCACGCGAGTTTGCGCAGGCGCTGCTGGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(185-384)

SRP54-type protein, helical bundle domain (SRP54_N)

(104-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.519

100

0.535