Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G7048_RS10205 Genome accession   NZ_CP049905
Coordinates   2192113..2193501 (-) Length   462 a.a.
NCBI ID   WP_166068032.1    Uniprot ID   A0A6G8BVR3
Organism   Diaphorobacter sp. HDW4B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187113..2198501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7048_RS10180 (G7048_10175) - 2188075..2188281 (-) 207 WP_166068026.1 zinc-finger domain-containing protein -
  G7048_RS10185 (G7048_10180) - 2188287..2189225 (-) 939 WP_166068027.1 branched-chain amino acid transaminase -
  G7048_RS10190 (G7048_10185) - 2189269..2189715 (-) 447 WP_166068028.1 glycerate kinase -
  G7048_RS10195 (G7048_10190) - 2189813..2190604 (-) 792 WP_166068030.1 endonuclease -
  G7048_RS10200 (G7048_10195) - 2190597..2191934 (-) 1338 WP_166068031.1 DNA cytosine methyltransferase -
  G7048_RS10205 (G7048_10200) radA 2192113..2193501 (-) 1389 WP_166068032.1 DNA repair protein RadA Machinery gene
  G7048_RS10210 (G7048_10205) - 2193576..2194322 (-) 747 WP_166068033.1 GntR family transcriptional regulator -
  G7048_RS10215 (G7048_10210) - 2194387..2196090 (+) 1704 WP_240933234.1 thiamine pyrophosphate-binding protein -
  G7048_RS10220 (G7048_10215) - 2196296..2197282 (+) 987 WP_166070904.1 tripartite tricarboxylate transporter substrate binding protein -
  G7048_RS10225 (G7048_10220) - 2197296..2198075 (+) 780 WP_166068034.1 VOC family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48324.72 Da        Isoelectric Point: 6.9986

>NTDB_id=428548 G7048_RS10205 WP_166068032.1 2192113..2193501(-) (radA) [Diaphorobacter sp. HDW4B]
MAKDKAIFICSECGGTSPRWLGKCPSCGAWNTLVESVVEGGNSGASKNRMSTSNYAGLAQAQVVTPLAAIEAQDVARSPS
GIEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRTGMPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQ
LEKILATMEATQPAVVVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKSTGIAVILVGHVTKEGALAGPRVLEHMVD
TVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPLLVEIQALV
DSSGPAPRRLSVGLDRDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPKGFIAFGE
VGLAGEVRPAPRGQERLKEAAKLGFTVAIVPKANAPKKPIEGLEIHAVERVDEAMNIVRGLG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=428548 G7048_RS10205 WP_166068032.1 2192113..2193501(-) (radA) [Diaphorobacter sp. HDW4B]
ATGGCCAAAGACAAGGCAATCTTCATCTGTTCCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGTCCTG
CGGCGCATGGAACACGCTGGTGGAATCGGTGGTCGAGGGCGGCAACAGCGGCGCGAGCAAGAACCGCATGAGCACGTCCA
ACTACGCGGGCCTTGCGCAGGCGCAGGTCGTCACGCCGCTCGCCGCGATTGAAGCGCAGGACGTCGCGCGTTCGCCCAGC
GGCATCGAAGAACTCGACCGCGTGCTCGGCGGCGGCATCGTCGAAGGCGGCGTCGTGCTGATCGGTGGCGACCCCGGCAT
CGGCAAATCCACGCTGCTGCTTCAAGCCATGGACGCGCTGCACCGCACCGGCATGCCCACGCTTTATGTGACCGGCGAGG
AAAGCGGCGCGCAGGTGGCGCTGCGTTCGCGTCGCCTCGGACTCGACCACAGCCAGGTGAATGTGCTGGCCGAAATCCAG
CTCGAAAAAATCCTCGCGACCATGGAGGCCACGCAGCCCGCCGTGGTGGTGATCGACTCGATCCAGACCGTGTATTCCGA
CCAGCTCACCAGCGCCCCCGGCTCCGTCGCACAGGTGCGCGAATGCGCGGCACACCTCACGCGCGCGGCCAAGTCCACCG
GCATCGCGGTGATCCTCGTCGGCCACGTGACCAAGGAAGGCGCGCTCGCCGGCCCGCGCGTGCTCGAACACATGGTGGAC
ACCGTGCTGTACTTCGAAGGCGACACGCATTCGAGCTTCCGCCTCGTTCGCGCGATCAAGAACCGCTTCGGCGCGGTCAA
CGAAATCGGCGTGTTCGCGATGACCGAAAAAGGCCTCAAGGGCGTGACCAACCCGAGCGCGATCTTTCTGTCGCAACACA
GCGAACCCGTGCCCGGCAGCTGCGTGCTCGTCACGCTTGAAGGCACGCGGCCTTTGCTGGTCGAAATCCAGGCGCTGGTC
GATTCCTCAGGCCCCGCGCCACGTCGTCTGTCGGTGGGCCTCGACCGAGACCGCCTCGCCATGCTGCTGGCCGTGCTCCA
CCGCCACGCAGGCGTGGCCTGCGCCGATCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCAG
CCGATTTGGCGGTGATGCTGTCGATCACCAGCAGCCTGCGCGGCAAAGCCTTGCCCAAGGGCTTCATCGCCTTCGGCGAA
GTGGGTTTGGCCGGTGAAGTGCGCCCCGCGCCGCGCGGTCAGGAGCGCCTGAAAGAAGCTGCAAAGTTGGGCTTCACCGT
CGCGATCGTGCCCAAGGCCAACGCGCCCAAAAAGCCCATCGAAGGCTTGGAAATCCACGCGGTGGAGCGGGTGGATGAGG
CGATGAATATCGTGCGTGGGTTGGGGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-227)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(365-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8BVR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.782

99.134

0.494
  radA Streptococcus mitis NCTC 12261

46.608

98.918

0.461
  radA Streptococcus pneumoniae Rx1

48.387

93.939

0.455
  radA Streptococcus pneumoniae D39

48.387

93.939

0.455
  radA Streptococcus pneumoniae R6

48.387

93.939

0.455
  radA Streptococcus pneumoniae TIGR4

48.387

93.939

0.455
  radA Streptococcus mitis SK321

48.387

93.939

0.455