Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   G7048_RS09040 Genome accession   NZ_CP049905
Coordinates   1955020..1956627 (-) Length   535 a.a.
NCBI ID   WP_166067813.1    Uniprot ID   A0A6G8BVC6
Organism   Diaphorobacter sp. HDW4B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1950020..1961627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7048_RS09030 (G7048_09025) - 1950370..1954107 (-) 3738 WP_166067811.1 M36 family metallopeptidase -
  G7048_RS09035 (G7048_09030) - 1954564..1955001 (-) 438 WP_166067812.1 thioesterase family protein -
  G7048_RS09040 (G7048_09035) rpoN/rpoN1 1955020..1956627 (-) 1608 WP_166067813.1 RNA polymerase factor sigma-54 Machinery gene
  G7048_RS09045 (G7048_09040) lptB 1956684..1957460 (-) 777 WP_205750388.1 LPS export ABC transporter ATP-binding protein -
  G7048_RS09050 (G7048_09045) lptA 1957505..1958161 (-) 657 WP_166067815.1 lipopolysaccharide transport periplasmic protein LptA -
  G7048_RS09055 (G7048_09050) - 1958391..1959041 (-) 651 WP_166067816.1 thiol:disulfide interchange protein DsbA/DsbL -
  G7048_RS09060 (G7048_09055) - 1959109..1959846 (-) 738 WP_166067817.1 SPOR domain-containing protein -
  G7048_RS09065 (G7048_09060) argS 1959870..1961579 (-) 1710 WP_166067818.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 535 a.a.        Molecular weight: 58374.42 Da        Isoelectric Point: 4.5495

>NTDB_id=428546 G7048_RS09040 WP_166067813.1 1955020..1956627(-) (rpoN/rpoN1) [Diaphorobacter sp. HDW4B]
MKPGLSLRVSQHLALTPQLQQSIKLLQLSTLELEQEVEQMLDDNPFLERTTEEAPREEFGLERADQPASEDAGDADGALY
QAPTSSTSTTSTASDESSTSSSESDSPAAGSEVSEQVDWEGDGTVEMAPDDGEWGGDAPARNNTSSSGDEEVDAIDLAGS
HESLTDHLHRQALALHLSDIDSAAVRFLIESLNDDGYLEESLAELALALAGADAPTEDLEELVHRFTVALRLLQSLDPAG
VGARNLSECLTLQLHGMNLDEEGDPAIIAVALRICRDSLDLLARKDVKRIMQACAAPEESTRAAMNLIARLEPRPGRRFA
DVQRQIIVPDVIVKNVGRGAQMRFTVQLNSDVMPRLRVHDIYANALRGQRGNEANAGLQQRLQEARWFIKNVQQRFDTIL
RVSTAIVERQKNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMSTPQGTFELKYFFGSGLGTETGGSASSTAVK
ALIKQLLSSENPKKPLSDSKIADMLAEQGIECARRTVAKYREALKIPPANLRKAV

Nucleotide


Download         Length: 1608 bp        

>NTDB_id=428546 G7048_RS09040 WP_166067813.1 1955020..1956627(-) (rpoN/rpoN1) [Diaphorobacter sp. HDW4B]
ATGAAGCCGGGACTGTCGCTTCGGGTCTCGCAGCATCTGGCGCTCACGCCACAGCTGCAGCAGTCGATCAAGCTGCTGCA
GCTCTCCACACTGGAGCTGGAACAGGAAGTCGAGCAGATGCTTGACGACAACCCCTTTCTGGAACGCACGACCGAGGAAG
CTCCGCGCGAGGAGTTCGGCCTCGAACGCGCCGACCAGCCCGCCAGCGAAGACGCTGGTGATGCGGACGGCGCGCTGTAT
CAGGCGCCCACTTCCAGCACCTCCACCACGTCGACTGCTTCCGACGAGTCTTCCACTTCCTCTTCAGAATCGGACTCGCC
CGCTGCAGGCTCCGAGGTCTCCGAGCAAGTTGACTGGGAAGGCGACGGCACCGTCGAGATGGCACCCGACGACGGCGAGT
GGGGCGGTGACGCGCCCGCGCGCAACAACACCAGCAGCTCCGGCGACGAAGAGGTCGATGCCATCGACCTCGCCGGTTCG
CACGAATCGCTGACCGACCATCTGCACCGCCAGGCGCTGGCCCTGCATCTCTCCGACATCGACAGCGCCGCCGTGCGCTT
TCTCATCGAATCGCTCAACGACGACGGCTATCTCGAAGAATCGCTGGCCGAACTGGCGCTCGCCTTGGCCGGTGCAGATG
CGCCAACCGAAGATCTGGAAGAACTCGTGCACCGCTTCACCGTGGCGCTGCGTTTGCTGCAAAGCCTCGATCCCGCAGGC
GTTGGTGCGCGCAATCTGAGCGAATGTCTCACGCTGCAACTGCACGGCATGAACCTCGACGAAGAGGGCGATCCGGCCAT
CATCGCGGTCGCGCTGCGCATCTGCCGTGATTCGCTCGACCTGCTGGCGCGCAAGGACGTCAAGCGCATCATGCAGGCCT
GCGCCGCGCCGGAAGAATCCACCCGCGCCGCGATGAACCTGATCGCGCGTCTGGAGCCACGGCCCGGTCGTCGCTTTGCC
GATGTGCAGCGCCAGATCATCGTGCCCGACGTGATCGTCAAGAACGTCGGTCGCGGTGCGCAGATGCGCTTCACCGTGCA
GCTCAATTCCGACGTCATGCCGCGCCTGCGCGTGCACGATATCTACGCCAACGCACTGCGCGGACAGCGCGGCAACGAGG
CCAATGCCGGGCTGCAGCAACGCCTGCAGGAAGCGCGCTGGTTCATCAAGAACGTGCAGCAGCGCTTCGACACCATCCTG
CGCGTGTCCACCGCCATCGTCGAGCGCCAGAAGAACTTCTTCGTGCACGGCGAACTGGCCATGCGCCCACTGGTGCTGCG
CGACATCGCCGATGAACTCGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGTCCACGCCGCAAG
GCACGTTCGAGCTGAAGTATTTCTTCGGATCGGGCCTCGGCACCGAGACCGGCGGCAGCGCGTCGAGCACGGCGGTGAAG
GCGCTGATCAAGCAATTGCTCAGCTCCGAAAACCCCAAGAAACCGCTCTCCGACAGCAAGATCGCCGACATGCTCGCCGA
GCAAGGCATCGAATGCGCGCGCCGCACCGTCGCCAAGTACCGCGAAGCGCTCAAGATTCCGCCTGCCAATCTGCGCAAGG
CGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(378-533)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(158-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8BVC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.296

100

0.518