Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V753_RS11915 Genome accession   NZ_CP049904
Coordinates   2476950..2477717 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain GB03     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2471950..2482717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS11895 (V753_11870) - 2472152..2472964 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  V753_RS11900 (V753_11875) ccpN 2472990..2473628 (-) 639 WP_007612649.1 transcriptional regulator CcpN -
  V753_RS11905 (V753_11880) glyS 2473729..2475768 (-) 2040 WP_007612651.1 glycine--tRNA ligase subunit beta -
  V753_RS11910 (V753_11885) glyQ 2475761..2476648 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  V753_RS11915 (V753_11890) recO 2476950..2477717 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  V753_RS11920 (V753_11895) - 2477754..2477897 (-) 144 WP_007408286.1 YqzL family protein -
  V753_RS11925 (V753_11900) era 2478053..2478958 (-) 906 WP_007612653.1 GTPase Era -
  V753_RS11930 (V753_11905) - 2478939..2479349 (-) 411 WP_003152976.1 cytidine deaminase -
  V753_RS11935 (V753_11910) - 2479473..2479847 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  V753_RS11940 (V753_11915) ybeY 2479828..2480301 (-) 474 WP_007612655.1 rRNA maturation RNase YbeY -
  V753_RS11945 (V753_11920) - 2480302..2482434 (-) 2133 WP_007612656.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=428508 V753_RS11915 WP_007408287.1 2476950..2477717(-) (recO) [Bacillus velezensis strain GB03]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=428508 V753_RS11915 WP_007408287.1 2476950..2477717(-) (recO) [Bacillus velezensis strain GB03]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAGCGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89