Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   V753_RS11410 Genome accession   NZ_CP049904
Coordinates   2391671..2392471 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain GB03     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2386671..2397471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS11380 (V753_11355) - 2387209..2387841 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  V753_RS11385 (V753_11360) - 2388138..2388275 (+) 138 WP_014470646.1 hypothetical protein -
  V753_RS11390 (V753_11365) - 2388369..2389487 (+) 1119 WP_029326082.1 NADH-dependent flavin oxidoreductase -
  V753_RS11395 (V753_11370) - 2389614..2389826 (+) 213 WP_007408362.1 spore germination protein -
  V753_RS11400 (V753_11375) - 2389952..2390164 (+) 213 WP_007612499.1 spore germination protein -
  V753_RS11405 (V753_11380) alr 2390341..2391522 (+) 1182 WP_007612500.1 alanine racemase -
  V753_RS11410 (V753_11385) spo0A 2391671..2392471 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  V753_RS11415 (V753_11390) spoIVB 2392752..2394032 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  V753_RS11420 (V753_11395) recN 2394196..2395926 (-) 1731 WP_007612501.1 DNA repair protein RecN Machinery gene
  V753_RS11425 (V753_11400) ahrC 2395958..2396407 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  V753_RS11430 (V753_11405) - 2396504..2397349 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=428499 V753_RS11410 WP_003153177.1 2391671..2392471(-) (spo0A) [Bacillus velezensis strain GB03]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=428499 V753_RS11410 WP_003153177.1 2391671..2392471(-) (spo0A) [Bacillus velezensis strain GB03]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATTTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTTATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97