Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V753_RS08610 Genome accession   NZ_CP049904
Coordinates   1773934..1774368 (+) Length   144 a.a.
NCBI ID   WP_007611576.1    Uniprot ID   A0A172XIP3
Organism   Bacillus velezensis strain GB03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1768934..1779368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS08605 (V753_08585) - 1772434..1773645 (-) 1212 WP_007611575.1 cytochrome P450 family protein -
  V753_RS08610 (V753_08590) nucA/comI 1773934..1774368 (+) 435 WP_007611576.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V753_RS08615 (V753_08595) - 1774428..1775183 (+) 756 WP_003154084.1 YoaK family protein -
  V753_RS08620 (V753_08600) - 1775217..1775579 (-) 363 WP_007410383.1 hypothetical protein -
  V753_RS08625 (V753_08605) - 1775763..1777091 (-) 1329 WP_007611580.1 S8 family peptidase -
  V753_RS08630 (V753_08610) - 1777270..1777503 (+) 234 WP_007611582.1 hypothetical protein -
  V753_RS08635 (V753_08615) - 1777759..1778466 (+) 708 WP_007611586.1 poly-gamma-glutamate hydrolase family protein -
  V753_RS08640 (V753_08620) - 1778526..1778978 (+) 453 WP_003154075.1 OsmC family protein -
  V753_RS08645 (V753_08625) - 1778992..1779345 (-) 354 WP_007410379.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15528.47 Da        Isoelectric Point: 7.2418

>NTDB_id=428497 V753_RS08610 WP_007611576.1 1773934..1774368(+) (nucA/comI) [Bacillus velezensis strain GB03]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=428497 V753_RS08610 WP_007611576.1 1773934..1774368(+) (nucA/comI) [Bacillus velezensis strain GB03]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATAGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172XIP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486