Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IF700_RS09590 Genome accession   NZ_CP062388
Coordinates   1949200..1950000 (-) Length   266 a.a.
NCBI ID   WP_240017458.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_044     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944200..1955000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF700_RS09570 (IF700_09500) - 1945412..1945504 (-) 93 WP_001790000.1 hypothetical protein -
  IF700_RS09575 (IF700_09505) - 1945468..1945602 (+) 135 WP_001790628.1 hypothetical protein -
  IF700_RS09580 (IF700_09510) rlmH 1945807..1946286 (-) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  IF700_RS09585 (IF700_09515) adsA 1946655..1948973 (-) 2319 WP_000645787.1 LPXTG-anchored adenosine synthase AdsA -
  IF700_RS09590 (IF700_09520) vicX 1949200..1950000 (-) 801 WP_240017458.1 MBL fold metallo-hydrolase Regulator
  IF700_RS09595 (IF700_09525) yycI 1950389..1951177 (-) 789 WP_001104165.1 two-component system regulatory protein YycI -
  IF700_RS09600 (IF700_09530) yycH 1951178..1952512 (-) 1335 WP_001060140.1 two-component system activity regulator YycH -
  IF700_RS09605 (IF700_09535) walK 1952505..1954331 (-) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30332.56 Da        Isoelectric Point: 6.4120

>NTDB_id=428495 IF700_RS09590 WP_240017458.1 1949200..1950000(-) (vicX) [Staphylococcus aureus strain NAS_AN_044]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIQDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
ERDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=428495 IF700_RS09590 WP_240017458.1 1949200..1950000(-) (vicX) [Staphylococcus aureus strain NAS_AN_044]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTCAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATCCCTATGGATCAGAAATTCATTTTTAATCC
TTATGAAACAAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCAATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACGGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGATGTGATTACAGGTAACACGA
AACGTATTTACCTATCGCATTTATCACAAGACAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACGCGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474