Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | V753_RS00580 | Genome accession | NZ_CP049904 |
| Coordinates | 104119..106554 (+) | Length | 811 a.a. |
| NCBI ID | WP_007615223.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain GB03 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 99119..111554
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V753_RS00565 (V753_00565) | ctsR | 101996..102460 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| V753_RS00570 (V753_00570) | - | 102474..103031 (+) | 558 | WP_029325704.1 | UvrB/UvrC motif-containing protein | - |
| V753_RS00575 (V753_00575) | - | 103031..104122 (+) | 1092 | WP_007615222.1 | protein arginine kinase | - |
| V753_RS00580 (V753_00580) | clpC | 104119..106554 (+) | 2436 | WP_007615223.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| V753_RS00585 (V753_00585) | radA | 106648..108027 (+) | 1380 | WP_007615224.1 | DNA repair protein RadA | Machinery gene |
| V753_RS00590 (V753_00590) | disA | 108031..109113 (+) | 1083 | WP_007615225.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| V753_RS00595 (V753_00595) | - | 109227..110327 (+) | 1101 | WP_003156403.1 | PIN/TRAM domain-containing protein | - |
| V753_RS00600 (V753_00600) | ispD | 110340..111038 (+) | 699 | WP_007615226.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| V753_RS00605 (V753_00605) | ispF | 111031..111507 (+) | 477 | WP_003156407.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90191.61 Da Isoelectric Point: 5.8528
>NTDB_id=428465 V753_RS00580 WP_007615223.1 104119..106554(+) (clpC) [Bacillus velezensis strain GB03]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSASGTNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=428465 V753_RS00580 WP_007615223.1 104119..106554(+) (clpC) [Bacillus velezensis strain GB03]
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATCGCATTTAAAGCTTTAGAAGCACTGG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTGGCCGCGAGAGTTCTGAACAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGATCTTCTGCATCCGGTACGAACAGCAATGCAAAC
ACGCCGACGCTTGACAGCTTGGCTCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAGAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAGACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGTACGGTTGTAGCTGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTCCAATGCATCGGTGCGACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCCGCTCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACACCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATTGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAACATTCT
GCACTCCCGCGTCATCGGCCAGGATGAAGCTGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGTCTGAAGG
ACCCGAAACGCCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCACGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAATGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAGGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGGTTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATACTATTAGGGTTAGTCCGTGAAGGTGAAGGGATCGCATTTAAAGCTTTAGAAGCACTGG
GCCTTAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATCGGTCGAGGGCAGGAAAGCACCACCTCTGTTCCTCAT
TACACACCTCGAGCCAAAAAGGTAATAGAGTTATCAATGGATGAAGCCAGAAAGCTAGGACATTCTTATGTGGGAACAGA
ACACATACTTCTCGGACTGATTCGTGAAGGAGAAGGCGTGGCCGCGAGAGTTCTGAACAATCTCGGTGTCAGCTTGAATA
AGGCGAGACAGCAAGTGCTGCAGCTTCTGGGAAGCAATGAGACGGGATCTTCTGCATCCGGTACGAACAGCAATGCAAAC
ACGCCGACGCTTGACAGCTTGGCTCGTGATTTAACTGCGATTGCGAAGGAAGACAGTCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACGAAGAATAATCCCGTTCTTATCGGAGAACCGGGTGTAG
GTAAGACTGCGATTGCTGAAGGCCTCGCACAGCAGATCATCAATAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACATTAGACATGGGTACGGTTGTAGCTGGTACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCCGGCAATATTATTTTATTCATTGACGAACTGCATACACTGATCGGAGCGGGGGGAGCAGAAGGTG
CGATTGACGCATCGAATATCTTAAAACCTTCACTGGCCCGCGGAGAGCTCCAATGCATCGGTGCGACAACGCTTGATGAA
TACCGTAAATATATCGAAAAAGACGCCGCTCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATCAGCCGTCAGCCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCCGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGATGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACACCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAGAGCCAGGAGTTTGAAAAAGCGGCTTCCCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGACACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATTGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAAAACATTCT
GCACTCCCGCGTCATCGGCCAGGATGAAGCTGTTGTAGCCGTTGCAAAGGCTGTCAGACGTGCAAGAGCCGGTCTGAAGG
ACCCGAAACGCCCGATTGGTTCATTCATCTTCTTAGGCCCTACAGGCGTTGGGAAGACAGAGCTGGCACGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACACTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATACTCCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTGGATTTCCGCAACACGATCCTGATTATGACGTCAAATGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGATCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATCGAGCTGACGGATGC
TGCAAAAGCAAAAGTGGCAGAAGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAACTCCTCAGAGGCAATATTGATAAGGGCCAGCACATTGTTCTTGATGTTGAGGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
97.041 |
100 |
0.97 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.688 |
98.767 |
0.491 |
| clpC | Streptococcus thermophilus LMD-9 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.995 |
100 |
0.467 |
| clpC | Streptococcus pneumoniae Rx1 |
45.141 |
100 |
0.453 |
| clpC | Streptococcus pneumoniae D39 |
45.141 |
100 |
0.453 |
| clpC | Streptococcus mutans UA159 |
44.203 |
100 |
0.451 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.895 |
100 |
0.45 |
| clpE | Streptococcus mutans UA159 |
53.313 |
80.025 |
0.427 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.709 |
84.834 |
0.422 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.388 |
80.025 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.388 |
80.025 |
0.419 |