Detailed information NTG0428393

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: IF701_RS06060
• Genome accession: NZ_CP062386
• Coordinates: 1225313..1226395 (-)
• Length: 360 a.a.
• NCBI ID: WP_196495164.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain NAS_AN_047
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1220313..1231395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF701_RS06040 (IF701_06030)	-	1220922..1221026 (-)	105	WP_001790092.1	hypothetical protein	-
IF701_RS06045 (IF701_06035)	secA	1221068..1223599 (-)	2532	WP_000506531.1	preprotein translocase subunit SecA	-
IF701_RS06050 (IF701_06040)	raiA	1224013..1224585 (-)	573	WP_000617735.1	ribosome-associated translation inhibitor RaiA	-
IF701_RS06055 (IF701_06045)	-	1224646..1225320 (-)	675	WP_001057965.1	ComF family protein	-
IF701_RS06060 (IF701_06050)	comFA	1225313..1226395 (-)	1083	WP_196495164.1	DEAD/DEAH box helicase	Machinery gene
IF701_RS06065 (IF701_06055)	fakB1	1226759..1227625 (-)	867	WP_000686343.1	fatty acid kinase binding subunit FakB1	-
IF701_RS06070 (IF701_06060)	-	1227769..1228410 (+)	642	WP_000192949.1	YigZ family protein	-
IF701_RS06075 (IF701_06065)	-	1228575..1229630 (-)	1056	WP_000258150.1	MraY family glycosyltransferase	-
IF701_RS06080 (IF701_06070)	-	1229948..1231018 (+)	1071	WP_000460983.1	GGDEF domain-containing protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42125.68 Da
• Isoelectric Point: 9.8307

>NTDB_id=428393 IF701_RS06060 WP_196495164.1 1225313..1226395(-) (comFA) [Staphylococcus aureus strain NAS_AN_047]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPIPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=428393 IF701_RS06060 WP_196495164.1 1225313..1226395(-) (comFA) [Staphylococcus aureus strain NAS_AN_047]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAATTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

• Type III restriction enzyme, res subunit (ResIII) (25-173)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367
comFA/cflA	Streptococcus pneumoniae Rx1	38.123	94.722	0.361
comFA/cflA	Streptococcus pneumoniae D39	38.123	94.722	0.361
comFA/cflA	Streptococcus pneumoniae R6	38.123	94.722	0.361